Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32583 86 / 1e-21 unknown protein AT4G24972 76 / 5e-18 TPD1 tapetum determinant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246900 [exp] 164 / 3e-53 AT1G32583 104 / 3e-29 unknown protein Potri.012G102900 [exp] 85 / 2e-21 AT1G32583 160 / 2e-50 unknown protein Potri.015G101000 [exp] 85 / 2e-21 AT1G32583 157 / 5e-49 unknown protein Potri.006G017600 [exp] 83 / 1e-20 AT1G32583 187 / 5e-61 unknown protein Potri.008G105600 [exp] 72 / 2e-16 AT4G24972 106 / 2e-29 tapetum determinant 1 (.1) Potri.002G233000 [exp] 56 / 1e-10 AT1G05835 111 / 2e-32 PHD finger protein (.1) Potri.010G145501 [exp] 40 / 7e-05 AT1G32583 74 / 1e-17 unknown protein Potri.004G167900 [exp] 38 / 0.0004 AT4G32090 117 / 7e-35 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016744 [exp] 79 / 4e-19 AT4G24972 172 / 5e-55 tapetum determinant 1 (.1) Lus10001911 [exp] 75 / 4e-18 AT1G32583 157 / 5e-50 unknown protein Lus10022437 [exp] 78 / 2e-17 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10026289 [exp] 57 / 5e-11 AT4G32090 72 / 5e-17 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10042384 [exp] 56 / 1e-10 AT4G32110 81 / 1e-20 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10012177 [exp] 49 / 2e-08 AT4G32090 66 / 6e-15 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10007569 [exp] 49 / 3e-08 AT4G32110 64 / 2e-14 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G246300.1 pacid=42797114 polypeptide=Potri.010G246300.1.p locus=Potri.010G246300 ID=Potri.010G246300.1.v4.1 annot-version=v4.1 ATGACTGGTCTGCTCTTGCTTTCTTCTCATGAAGTGAAAGGATCAGCTACAAAGAAGATGGACAGATGTTCATCAAAGAACGAGATCACGGTTGCACAAG GCCCTGCCGGTACTCTTCCAAGTGGGATACCGCAATTTTCAGTGGAAATCGCAAACACAAATTCGCAAGTACCCATTGCTAATATCCATCTCAACTGTAA GGAATTCAGTTCTGCCATCCTTGTTAACCCTGAGATATTCAAGCGCATTGCCGTGGATGACTGTCTGGTCAACGACGGAAGAGCACTAGCTAGCTCCCGG TGCAGCACTCTCCTTCAAATTAATACGCCAACACCAAGCAATACCCTCTTACAGTTCTCTCAGCCACTTGTTAAATCATCCGCAGTTTCATGCGCTTTCA GCATTGTTGCTAGCTAG
AA sequence Show only first row Show all	>Potri.010G246300.1 pacid=42797114 polypeptide=Potri.010G246300.1.p locus=Potri.010G246300 ID=Potri.010G246300.1.v4.1 annot-version=v4.1 MTGLLLLSSHEVKGSATKKMDRCSSKNEITVAQGPAGTLPSGIPQFSVEIANTNSQVPIANIHLNCKEFSSAILVNPEIFKRIAVDDCLVNDGRALASSR CSTLLQINTPTPSNTLLQFSQPLVKSSAVSCAFSIVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32583			unknown protein		Potri.010G246300 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Potri.001G459300 [exp]	4.47	0.7629
					Potri.005G161366 [exp]	5.47	0.7874
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	8.94	0.7254
AT4G04650			RNA-directed DNA polymerase (r...		Potri.007G061250 [exp]	41.85	0.6452
					Potri.006G119250 [exp]	42.28	0.7395
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.011G040200 [exp]	45.09	0.7029
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102501 [exp]	48.51	0.6870
					Potri.001G105150 [exp]	49.83	0.6594
AT5G05800			unknown protein		Potri.001G370432 [exp]	78.42	0.6598
AT3G22210			unknown protein		Potri.016G018650 [exp]	92.37	0.6174

Compare expression of checked genes

Potri.010G246300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.