Plant FIBer expression Database

Potri.010G246400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04920 552 / 0 EAP30/Vps36 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028877
[exp]
604 / 0 AT5G04920 598 / 0.0 EAP30/Vps36 family protein (.1)
Lus10008942
[exp]
585 / 0 AT5G04920 598 / 0.0 EAP30/Vps36 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF04157 EAP30 EAP30/Vps36 family
CL0266 PH PF11605 Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36
Representative CDS sequence
>Potri.010G246400.5 pacid=42799483 polypeptide=Potri.010G246400.5.p locus=Potri.010G246400 ID=Potri.010G246400.5.v4.1 annot-version=v4.1
ATGTCCACCGCCACCACCAGTTTTTTCGAACCAGCCTCCGTGACCAGCAGTGGCCGTCCAGTCCTCCACCAAGCCGAAGTAGAATGCCACCTCCTCTCAC
CTGTAGACCTTGAAACCGAACCCACCACCACCGCGACAACCACCATCAATTCACTTGACTTCCCTGCATTAAAATCAGGCCTTGGAATCCTCACCACACA
CCGCCTCCTTTGGCTTCCTTCTAATGCTACGACAGACAGTTCAAGTCCAATATCAATCCCTTTGAGTTCTGTAACTCATATATTTTCACCAAAAAAGTCG
ATCAAGTCAATGTTTCACTCACCCCGGATCCGGTTTCAAGTTTCTATGCATTCAAGGAGTGTTGTGGTGACTTTAGTGATTAGAGGGAAGGGAGATATTG
ATGGGTTTTTGACAAAGTTTTGGGATTGTTGGAGAGGAAGGGCTTGGGAGACTGGTAATGATAGTGGCGGTGGGTCAAGTTCGGGGTCTGTTCCGGCTTC
TGGGTCAGTTTCGGGTGGTGGGTTATACTCGAGTGATGGGTCAGTGAGGCTAGTGGGTGTGTCTGGGATATTGAGGAAAGAGCAGGAGATGTGGGAAAGT
ACTGATAAGAGCTTGCAAGAGGCTTTTCATGACTTGAATGCTCTTATGAGAAAGGCCAAAGAAATGGTCATCCTAGCAGAGAAGATGAGGCAGAAGCTTT
TGTCTGGATCGAGCTCTCAAAGTAGTTCTGGGAATGATGAGGAAATGGGTTCCAAAGAAGAGATGCAAGATTGGCTGTTGAGTGTTGGTATCGTATCTCC
AGTAACAAAAGAATCTGCAGGTGCCATGTATCATCAACAACTGTCCCGTCAGTTGGCAGATTTTGTCAGAATTCCCCTAGAGAAAGCTGGAGGAATGATC
AATCTTATAGATATCTATTGCCTCTTCAATCGTGCTCGGGGCACAGAATTGATCTCACCTGAGGATTTGTTGCAAGCATGTTCTCTTTGGGAGAAGTTTG
ATGTTCCAGTAATGCTTCGGAAATTTGATAGTGGAGTGAAGGTCATCCAGAATAAGTCCCATAGTGATGAGGAGGTTTTTGCAAGAATCAAAAACCTTGT
ATCAAAGCCTGAAGCCCTGCGGTCTGGAATAACTGCTAGTGATGCTGCCATGACATTGGGTATTGCTCCAGCTATGGCCAAGGAGCATCTTCTAACTGCT
GAGAGCAAAGGATTGCTATGCAGGGATATAAGCCCTGATGGATTTCGCTTTTTCATTAACCTCTTTCCTGAAATCAATTCTGATGATATACACATGGTGA
AGGATCATGGGATTTATTCTCTGTGGATAAAAAGTTGGTAG
AA sequence
>Potri.010G246400.5 pacid=42799483 polypeptide=Potri.010G246400.5.p locus=Potri.010G246400 ID=Potri.010G246400.5.v4.1 annot-version=v4.1
MSTATTSFFEPASVTSSGRPVLHQAEVECHLLSPVDLETEPTTTATTTINSLDFPALKSGLGILTTHRLLWLPSNATTDSSSPISIPLSSVTHIFSPKKS
IKSMFHSPRIRFQVSMHSRSVVVTLVIRGKGDIDGFLTKFWDCWRGRAWETGNDSGGGSSSGSVPASGSVSGGGLYSSDGSVRLVGVSGILRKEQEMWES
TDKSLQEAFHDLNALMRKAKEMVILAEKMRQKLLSGSSSQSSSGNDEEMGSKEEMQDWLLSVGIVSPVTKESAGAMYHQQLSRQLADFVRIPLEKAGGMI
NLIDIYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQNKSHSDEEVFARIKNLVSKPEALRSGITASDAAMTLGIAPAMAKEHLLTA
ESKGLLCRDISPDGFRFFINLFPEINSDDIHMVKDHGIYSLWIKSW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04920 EAP30/Vps36 family protein (.1... Potri.010G246400
[exp]
0 1
AT3G02280 Flavodoxin family protein (.1) Potri.004G101100
[exp]
10.24 0.7803
AT4G25540 ATMSH3, MSH3 homolog of DNA mismatch repair... Potri.015G142900
[exp]
11.09 0.7974
AT1G28530 unknown protein Potri.004G051000
[exp]
12.24 0.7826
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Potri.008G084700
[exp]
13.71 0.7893
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.018G083000
[exp]
17.54 0.7864
AT1G74120 Mitochondrial transcription te... Potri.018G051600
[exp]
25.80 0.7880
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Potri.002G044000
[exp]
28.77 0.7807
AT5G36930 Disease resistance protein (TI... Potri.011G008612
[exp]
31.63 0.7716
AT2G24530 unknown protein Potri.003G187400
[exp]
32.03 0.7579
AT2G31600 unknown protein Potri.007G126300
[exp]
35.25 0.7010

Potri.010G246400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.