Plant FIBer expression Database

Potri.010G246500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18440 202 / 8e-58 AtNUFIP nuclear FMRP-interacting protein, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G012250
[exp]
481 / 1e-165 AT5G18440 169 / 2e-47 nuclear FMRP-interacting protein, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034863
[exp]
201 / 2e-56 AT5G18440 192 / 7e-55 nuclear FMRP-interacting protein, unknown protein
Lus10033402
[exp]
131 / 2e-32 AT5G18440 144 / 8e-38 nuclear FMRP-interacting protein, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10453 NUFIP1 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
Representative CDS sequence
>Potri.010G246500.2 pacid=42799992 polypeptide=Potri.010G246500.2.p locus=Potri.010G246500 ID=Potri.010G246500.2.v4.1 annot-version=v4.1
ATGGAACCTTTCTTCAATTCCCGTCGTCCTAGACATCACAAACAAAAGGGCAACACTGCTCCTTATAATCAACAGGGATTTTCAGCAAATCCTTCTTTAA
CAAATTCAATGCAACCTCAGCTGGGTTTAGTCAATCCTCAAATCCCAATTCCTTTTAATAATTCAAATACCCCTTTAAGAAATGGACAAGCCATGCCTAA
TATGCCACCTTTAATCAATCAACAACATGGTCTAGTGAGTGGACCTAATGATCTGGCTATCCTTCAGTTACAAAATCAGGTCAACAAGTTGAATGCTTTA
AAGATGTTGATGAATCAAGTAAATCAATTGCAAGGAGAGCTGTTTGGTCCTGGTTTCTCCAATTTGCCTCAACAAATCAATCAAAATATGGGTTTGTTGC
AAAATCCAATGCAGAATATGATGAACCCTGTTATGCCTATGCAAATGCCAATGACTTCTCAAGTTGGTTCCTTTAATGTCCCTTCCAGAAGTCACCAAGT
GGTAGGTGCTCAAAGTCCAAACTTTTTTGTAAATCAACAAGTTAAGCAGAACCAGCCAAACTTTGTAATGCCGACAACTGGTGCAAATGGATCGAAACAA
TTGTCTTTTGAAAATCAGCAAATGCAAGGGAACTTGTCTGCAACACAGAAAAATCAGAACTTTGTAATGCCTGCGGTGGGTACAAATGGGTCAAATTCAT
TGCATGTTGCAACTCAGCAAGTGCAAGGGATCTCGCCAGCATCACAACAAAGTGAGAAATTTGTAATGCCTACAATGGCTGCAAATGGACCAAAGCCTTT
GCCAGCTGCAACTCAGCAAGTGCAAGGGAACCCATTTACATCTCAGCAAAGTCAGAACTTGCAACCCTCTGCTTACAATAGGTGGCAGGGCAATCCTGCT
AAAAATGGCCAGGGTAGTACTCCAAATTCCAAACAAGGAATCTTTTCTGGAAAAAACTTCAAAAATAATCCAAAGAGAGAGCAATCACAATCAGGACATC
AGAAATCCGAGTTCCATCGCATGGATAATGGAAAGAGAAAGCTTGGGTTTTCTAATAAACACGGTGGAAAAGGGAAAGGCAATGAGAGGGCAGCAAAATT
TGGTCGCTCTGATCCTTCAAACCAAGTTATGGAACAGAAAAGAACTCATATATACACGGAACAAGAAATCAAACAATGGCGTGAATCACGTAGGAAGCAC
TTCCCAACAAAAACCAACATAGAGAAGAAGCAGACTGAAAAGCTAATAGACTCTGGGGTCATTGATAAAGAGGCCAACTTTCGTCGCAAGCAACTCAAGG
AGATTTTGGCAAAGCAGGCTGAGCTAGGAGTTGAAGTTGCTGAAATACCACCAGAATACATGTTAGATTCGGAGAAGTTAGGAGTTGAAGTTGCAGAAAC
ACCACTGAGCTATCTGTTAGATTCAGAGAAGCTAGGAGTTGAAGCTGCAGAAATACCACCGCACCATCTGTTAGATTCAGAGAAACAAGAGCATGGAAGG
GAAGATAACAGAAGGTCCTTGACTAAGAAGGGGAGATTCTGGAACAAGCATGATAGAAGAGGAAGATATAAGAGAAAAGGTCGGTCAGACATGCAGCTTG
GATTAGAAAACGAGGAGAGGAAGCCAACGCTGTTGGAGAAGCTTCTTTGTGCAGATATAAAGAGGGATAAGCACCGGTTGTTGCAGGTTTTTAGGTTCAT
GGTGGCGAACTCTTTCTTCAAGGATTGGTCAGATAAGCCTTTGAAGTTTCCTTCGGTAGTGGTTAAAGAAGATGGTTGCAAGGATGAGCCACAGGAAGAA
AAACCTTCACTTGTTGGGGAAGAAGAGTCTGAAGTTCCGAACAATACAACAGTTGAAGATTTTGGTGATAGAGATGATGGCGACGAACATGATGCTCAAG
TGGAGCCAGGGAATGGTTCTGTCATGGGAAAATGTGATATTGTTGACGAAGTTTATAGGGTTGAAGAAGGAGAAATCATTGACTAA
AA sequence
>Potri.010G246500.2 pacid=42799992 polypeptide=Potri.010G246500.2.p locus=Potri.010G246500 ID=Potri.010G246500.2.v4.1 annot-version=v4.1
MEPFFNSRRPRHHKQKGNTAPYNQQGFSANPSLTNSMQPQLGLVNPQIPIPFNNSNTPLRNGQAMPNMPPLINQQHGLVSGPNDLAILQLQNQVNKLNAL
KMLMNQVNQLQGELFGPGFSNLPQQINQNMGLLQNPMQNMMNPVMPMQMPMTSQVGSFNVPSRSHQVVGAQSPNFFVNQQVKQNQPNFVMPTTGANGSKQ
LSFENQQMQGNLSATQKNQNFVMPAVGTNGSNSLHVATQQVQGISPASQQSEKFVMPTMAANGPKPLPAATQQVQGNPFTSQQSQNLQPSAYNRWQGNPA
KNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRKLGFSNKHGGKGKGNERAAKFGRSDPSNQVMEQKRTHIYTEQEIKQWRESRRKH
FPTKTNIEKKQTEKLIDSGVIDKEANFRRKQLKEILAKQAELGVEVAEIPPEYMLDSEKLGVEVAETPLSYLLDSEKLGVEAAEIPPHHLLDSEKQEHGR
EDNRRSLTKKGRFWNKHDRRGRYKRKGRSDMQLGLENEERKPTLLEKLLCADIKRDKHRLLQVFRFMVANSFFKDWSDKPLKFPSVVVKEDGCKDEPQEE
KPSLVGEEESEVPNNTTVEDFGDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRVEEGEIID

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.010G246500
[exp]
0 1
AT3G49990 unknown protein Potri.005G234800
[exp]
1.73 0.8668
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
4.47 0.7954
AT4G31120 PRMT5, SKB1 ,AT... PROTEIN ARGININE METHYLTRANSFE... Potri.018G000500
[exp]
7.34 0.7882
AT2G37990 ribosome biogenesis regulatory... Potri.005G231000
[exp]
10.00 0.7771
AT1G06720 P-loop containing nucleoside t... Potri.017G017700
[exp]
10.19 0.7780
AT3G57000 nucleolar essential protein-re... Potri.006G040600
[exp]
11.53 0.7568
AT1G29320 Transducin/WD40 repeat-like su... Potri.015G092400
[exp]
11.95 0.7365
AT3G22660 rRNA processing protein-relate... Potri.015G131200
[exp]
12.96 0.7368
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
13.85 0.7747
AT1G74240 Mitochondrial substrate carrie... Potri.012G066000
[exp]
15.19 0.7455

Potri.010G246500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.