Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 118 / 7e-29 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59780 78 / 3e-15 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 75 / 2e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 71 / 4e-13 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 69 / 1e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 68 / 3e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 68 / 4e-12 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58807 67 / 7e-12 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 61 / 6e-10 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 61 / 6e-10 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035400 [exp] 468 / 1e-158 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035700 [exp] 408 / 3e-135 AT3G07040 397 / 1e-123 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G165700 [exp] 320 / 2e-101 AT3G07040 471 / 1e-151 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 140 / 1e-36 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 136 / 4e-35 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 136 / 4e-35 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 126 / 1e-31 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 125 / 2e-31 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 125 / 3e-31 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027281 [exp] 134 / 2e-34 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 134 / 3e-34 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 89 / 5e-19 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 81 / 2e-16 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 81 / 2e-16 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 70 / 1e-12 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10025625 [exp] 68 / 1e-12 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10028075 [exp] 62 / 2e-10 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028076 [exp] 59 / 3e-09 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10028639 [exp] 58 / 8e-09 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G246650.1 pacid=42799802 polypeptide=Potri.010G246650.1.p locus=Potri.010G246650 ID=Potri.010G246650.1.v4.1 annot-version=v4.1 ATGGCAGTAGAATATTGGCTACAACATGAGGATCCATTCTTGGATCACCGTGTTCATGATTTGGTACATGATGTCATTCTTTCCACGTCAAAGGAGCCGA GTCTCTGCCATGTTTCCAGTAGTTTCTCAACCTTCGAAGGCATAGCGCGACATCTCTCCATAAGCAACAGAGGAAGCAACACTCCAAATAGTATCACCAA GTCTCAAACTCGCTCTGTTATAGCTTGTAACGAAACCGCCTTCCCAAAAAGATATTTAAACTTAAGAGATACCAGAGCAGCTAAACTTCCAAGATCAATA AGAAAGCTTCATGACCTGGAGTCCTTGGATTTGAGAAATTCTTTCGTGGAAGAGTTGCCAGTTGAGATCAGTACGTTCCCTGAATTGCGACATCTTTTGG CTGATGATAGAAAGACTCGGGCATTGAAGATACATGGCAGCATTAAGCATTTGGAGTTCTTGCAAACGTTGTTTATAATTAAAGTGGATCGTAATTTAAG CTTGATCAATGATGGCCTACAAGTGTCGACGAAGATGAGGAAATTGGGGATCATCAATTTGAAAAGAGAACATGGAAGTCCAATCAATATCTTCTCCTCC TCTTCAGCTGCAAAGTCTCCTAGTTGGATTCCCAAACTACACAATCTGGCTGAACTGAGTTTGAGTTTTACAAACTTCATGGATGATTCCATTGAAGTCC TTCAAGCTCTGCCCAATCTAAAATATCTTGCACTTGTATGGGCATACAACGGAGAGAAGATGCATTTTGAAGGAGGAGGGTTTCAGAAACTCAAGTTTCT GTCTCTTGCAGGCTTGAGCAATCTGAATGAAATGTTAATAAACGAAGGAGCATTGCCACTTCTTAAAAGACTAGAAATGGGACCCTGCCCAAAACTGAAT AAGGTGCCCTCTGGAAATCAAAACTTGAGATATCTCAAAGATTTATCGTCCGCAGGGATGACAAATGAGTTCACTCAAAGATTGTCACGGCAAGAATCCG AGATAGTGAGGCACATACCGATTCTCCGATATGATGCTACTTATGATCCCAATGATGAAGGATCTTATGGAGCATTTGGATGA
AA sequence Show only first row Show all	>Potri.010G246650.1 pacid=42799802 polypeptide=Potri.010G246650.1.p locus=Potri.010G246650 ID=Potri.010G246650.1.v4.1 annot-version=v4.1 MAVEYWLQHEDPFLDHRVHDLVHDVILSTSKEPSLCHVSSSFSTFEGIARHLSISNRGSNTPNSITKSQTRSVIACNETAFPKRYLNLRDTRAAKLPRSI RKLHDLESLDLRNSFVEELPVEISTFPELRHLLADDRKTRALKIHGSIKHLEFLQTLFIIKVDRNLSLINDGLQVSTKMRKLGIINLKREHGSPINIFSS SSAAKSPSWIPKLHNLAELSLSFTNFMDDSIEVLQALPNLKYLALVWAYNGEKMHFEGGGFQKLKFLSLAGLSNLNEMLINEGALPLLKRLEMGPCPKLN KVPSGNQNLRYLKDLSSAGMTNEFTQRLSRQESEIVRHIPILRYDATYDPNDEGSYGAFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.010G246650 [exp]	0	1
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Potri.001G191500 [exp]	3.74	0.6182
					Potri.002G188801 [exp]	18.97	0.6038
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.013G153200 [exp]	20.49	0.5955
AT4G01580	B3		AP2/B3-like transcriptional fa...		Potri.007G035700 [exp]	43.15	0.5887
AT3G28370			unknown protein		Potri.001G350100 [exp]	43.26	0.5290
AT5G06350			ARM repeat superfamily protein...		Potri.011G096201 [exp]	57.27	0.5203
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	83.49	0.5487
AT1G43760			DNAse I-like superfamily prote...		Potri.014G186866 [exp]	115.54	0.5271
					Potri.005G043600 [exp]	170.16	0.5116

Compare expression of checked genes

Potri.010G246650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.