Plant FIBer expression Database

Potri.010G247000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10690 1365 / 0 GYRA DNA GYRASE A (.1)
AT3G23890 78 / 2e-14 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G058900
[exp]
77 / 6e-14 AT3G23890 1691 / 0.0 topoisomerase II (.1.2)
Potri.001G264000
[exp]
66 / 9e-11 AT3G23890 1716 / 0.0 topoisomerase II (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028879
[exp]
1432 / 0 AT3G10690 1344 / 0.0 DNA GYRASE A (.1)
Lus10008940
[exp]
1140 / 0 AT3G10690 1053 / 0.0 DNA GYRASE A (.1)
Lus10016397
[exp]
74 / 4e-13 AT3G23890 1682 / 0.0 topoisomerase II (.1.2)
Lus10019720
[exp]
74 / 5e-13 AT3G23890 1685 / 0.0 topoisomerase II (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A
PF03989 DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller
Representative CDS sequence
>Potri.010G247000.1 pacid=42797099 polypeptide=Potri.010G247000.1.p locus=Potri.010G247000 ID=Potri.010G247000.1.v4.1 annot-version=v4.1
ATGAACCCCTCTTCTCTTACAAGATTAAACCCTAATTCTTGCGACCCCATGTCTCTCCCCTCCACTCTCCGTCTCTCCTCTCTTCTCCACCGTCTCCCTC
CTCCTTCCCGCCGTTATTTCTCTTTCCTCCACCACCGCTCCGTCTCCGACCTCCGCTTCTCCTCCTCCTCCCCCCGCATCCGTCCCGTTGTTCAATCTCG
CCGCCGTGAGGAACCCGCCACTGATGATAGTGAGAATGGGAGCCTGTTAGTGAAGGATCCGAATGGGGGTAGTCCAGGCGGTGGAAATGGGCGGGTTGTT
CAAACGGAGCTTCATAAAGAGGCTACTGAGGCCTATATGGCTTATGCTATGTCTGTTTTGCTTGGTAGAGCCTTGCCCGATGTTAGAGATGGGCTAAAAC
CAGTTCACCGGAGGATTCTATTTGCAATGCATGAATTGGGGCTTTCTTCGAAAAAGCCGTTTAAAAAATGTGCTAGAGTTGTTGGTGAGGTTTTGGGCAA
GTTTCATCCCCATGGAGATACTGCTGTCTATGATGCTCTAGTTCGAATGGCGCAGGATTTCTCACTGAGATGCCCTCTTATTCAAGGGCATGGGAATTTT
GGTTCGGTTGATGCGGATCCTCCTGCCGCCATGCGTTATACAGAATGCAGGCTGGATGGACTTACAGAGGCAGTTTTTTTGGCTGATCTCGAACAAGATA
CAGTTGATTTTGTCCCTAACTTTGACAATTCCCAAAAGGAACCTTCACTTTTTCCTACTCGGCTTCCAACTTTATTGTTGAATGGTTCTTCTGGGATTGC
GGTTGGCATGGCAACCAAAATTCCTCCTCATAATCTTGGAGAGCTGGTGGATGTGTTATGTGCCCTAATTCACAACCCAGAAGCCACTTTGCAAGAGTTG
TTAGAATACATGCCTGGACCTGACTTTCCAACTGGAGGAATTATCATGGGAAATCAAGGGATCTTAGACGCATATCGATCTGGGCAAGGACGTATCGTAG
TCAGAGGAAAAACAGATGTTGAATTGCTTGACTCGAAAACAAAGAGAAACGCTGTTATCATAAAAGAGATTCCTTATCAAACCAACAAAGCATCGCTGGT
GGAAAAAATTGCTGAACTTGTGGAGGATAAGAATTTGGATGGCATTAGTGATATCCGTGATGAAAGTGATCGTTCTGGCATGCGTATAGTCATTGAGCTG
AAACGGGGGGCAGATCCGTCAATTGTGTTAAATAATCTCTATCGTCTTACTCCTCTTCAGTCTAGTTTTAGCTGCAACATGGTTGGTATTCTTGATGGAC
AACCTAAACAGATGGGTCTGAAAGAGTTGCTTCAGGCATTCTTAGACTTCAGATGCTCTGTCGTAGAACGGCGTGCCATGTTCAAGCTTTCTGAAGCACA
GAAAAGAAGACATATTGTCGAGGGCGTCATGGCGGGGCTTGATAATTTGGATAGAGTGGTTGATATAATTAGAAAAGCTTCAAGCAATGCAATTGCATCC
GCTGATCTAAGGAATGAATTCAGTCTGTCTGAGAAACAAGCTGAAGCTATTTTGGACATAAGCCTAAGAAGGCTTACCCTTCTTGAGGGGAAAAAGTTTG
TTGAAGAAAGTAAATCATTGATGGAACAAATAACTAAGCTAGAGGAACTATTGTCAAGCAGGGGAAATATATTGCAGTTGATTGAACAAGAAGCAGTCGA
GCTTAAAAATAAGTTCTCCAATCCAAGGCGTTCAATGTTGGAGGACTCTGATAGTGGTCAGCTTGAAGATATAGATGTTATTCCAAATGAAGAAATGCTC
CTGGCAATTAGTGAAAAGGGCTATGTTAAGCGGATGAAGCCTAACACGTTTAATCTTCAAAATCGTGGAACAATCGGTAAATCTGTTGGGAAGTTGAGAG
ATAGTGATGCAATGTCTGACTTCATTGTCTGTCATGCACATGACCGTGTGCTATATTTCAGTGATCAGGGAATAGTATACTCTGCTCCTGCTTATAAAAT
CCCTGAATGCACCAGGGCTGCTGCTGGCACACCACTGATCCAGTTCTTATCTTTATCTGATGGTGAAAGAATAACTTCCATTATTCCTGTGAGCGAGTTT
GTGGAAGATCAATTTCTACTGATGCTTACTGTCAATGGCTACATCAAGAAAGTATCTTTGAACTCTTTCTCAGCCATACGTTCAACTGGAATCATAGCAA
TACAGTTGGTTCCTGGCGATGAACTAAAATGGGTCCGCTGTTGCACAAATGGTGATCTTGTGGCCATGGCTTCACAAAATGGAATGGTCATCCTCACTTC
CTGTGAGAATATTCGAGCTCTAGGTAGAAATACAAGGGGTGGGGTGGCCATGAGGCTAAGAGAAGGTGACAAGATAGCAAGCATGGACATAATACCAGCT
TCCCTGCAGAAAGACTTGGAGGTGGCGTCAAAAGATTCTGAGAATAACAACAAGGGCACTGGTCCGTGGTTGTTGTTTGTGTCTGAGAGTGGTCATGGAA
AGCGGGTTCCCCTCAGTAGCTTCAAGCAATCACGTTTGAACAGAGTTGGATTAATTGGTTATAAGTTCTTTGAGGAAGATCACTTGGCAGCTGTCTTTGC
AGTTGGTTTTTCATTGACAGAAGATGGTGAAAGTGATGAGCAAGTGGTTCTTGTAAGCCAAAGTGGCACTGTCAATCGAATTAAAGTTAGGGATATTTCA
ATACAATCCCGCTTTGCAAGGGGAGTTATTTTGATGCGGCTGGAGCATGCTGGCAAGATTCAGTCAACTTCCTTGATCTCCGCTGCAGATCCTGAATTAG
AGGAATTGGCACCCGTGCCTGAACTCCTATCCGAGGCATCATTATAA
AA sequence
>Potri.010G247000.1 pacid=42797099 polypeptide=Potri.010G247000.1.p locus=Potri.010G247000 ID=Potri.010G247000.1.v4.1 annot-version=v4.1
MNPSSLTRLNPNSCDPMSLPSTLRLSSLLHRLPPPSRRYFSFLHHRSVSDLRFSSSSPRIRPVVQSRRREEPATDDSENGSLLVKDPNGGSPGGGNGRVV
QTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNF
GSVDADPPAAMRYTECRLDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPHNLGELVDVLCALIHNPEATLQEL
LEYMPGPDFPTGGIIMGNQGILDAYRSGQGRIVVRGKTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIVIEL
KRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVVERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIAS
ADLRNEFSLSEKQAEAILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEML
LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSEF
VEDQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPA
SLQKDLEVASKDSENNNKGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSLTEDGESDEQVVLVSQSGTVNRIKVRDIS
IQSRFARGVILMRLEHAGKIQSTSLISAADPELEELAPVPELLSEASL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10690 GYRA DNA GYRASE A (.1) Potri.010G247000
[exp]
0 1
AT4G30890 UBP24 ubiquitin-specific protease 24... Potri.003G202800
[exp]
4.00 0.8434
AT3G16260 TRZ4 tRNAse Z4 (.1) Potri.001G186900
[exp]
4.89 0.8777
AT4G09730 RH39 RH39 (.1) Potri.005G198300
[exp]
9.27 0.8755
AT1G28530 unknown protein Potri.004G051000
[exp]
9.89 0.8216
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
10.95 0.8576
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
12.00 0.8456
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
12.80 0.7870
AT4G38890 FMN-linked oxidoreductases sup... Potri.009G125500
[exp]
13.60 0.8456
AT2G30140 UDP-Glycosyltransferase superf... Potri.009G077500
[exp]
19.59 0.7943
AT5G13520 peptidase M1 family protein (.... Potri.010G215700
[exp]
21.00 0.8430

Potri.010G247000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.