Plant FIBer expression Database

Potri.010G247100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50350 55 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G012000
[exp]
776 / 0 AT5G50350 54 / 3e-07 unknown protein
Potri.012G094200
[exp]
92 / 3e-19 AT5G50350 234 / 3e-69 unknown protein
Potri.015G091500
[exp]
84 / 7e-17 AT5G50350 229 / 1e-67 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034861
[exp]
395 / 7e-131 AT5G50350 58 / 1e-08 unknown protein
Lus10033401
[exp]
374 / 6e-123 AT5G50350 57 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G247100.1 pacid=42799847 polypeptide=Potri.010G247100.1.p locus=Potri.010G247100 ID=Potri.010G247100.1.v4.1 annot-version=v4.1
ATGGCAATGGCAGCCTTCAAATCCACATCAAGAAGGGCAACAACAACAACAAGTGCAGCAACATCAGATAAAGAAACTTCAACAAAGCAGCACGCTTTAC
CAAGAAAAACAGTACCCTCAAGAAGATCAAGGAGTGTGAGTGCAGTCTCAAGATCCCATCTTGTTGATACTTGTTCAACAACAAGAACAGCAGCAGAAGG
AACAGCAACAGGGTCCACAGATTTCTTGATTAAAAGAGACAACCCGCTTTACTGGAGCAATGTTTCTCCACCTGGTAAAGAAGTCAGTGAAGTTGTGGCT
GACAAGGAAGAGTCTAAGAGTGCACCCACAAAGCCGAATGCTGTTGGTGATAGTAGGAGAGGGAGATCCGTGTCAAGAAAGGCTGATGCTGGAAGAAACG
TTTCTGGGATTGGTAGGAGTTTGTCTAGGGGTCCTGTTTCTAGAGGGAGGTCTGTGTCTCGGCCTCCTGGCTCTGGAGGCCATTTCGTGAATTCCGAGAG
TGATGCTGAACAAGAAGGGAGTTCGTTGATGAAATATATAAATGGGAGTGGTGGTTTGAGTGATGTGTCAAATGCTGGAAGAAATAGTGATTTAGCGAGA
AGGAGTTATGATAGTAAATTTGAGAAGATGAGAAGTTCGCCCATGCGATCAGATGGATCTGCTGCAGATTTGCCTTCTTTGCCTTTTAGGAGCTGGGAAG
ATGGAGGTTTGGGAAGCTCATTTTCAGAAGCTGAAGAGAGAACTATCAAAGCAGTCTGTGAACAAATGCAGTCATTCCAAGGGGATAATTTGGGAGATGG
CACCTCTAGTCGAATATATGAAACTGTTCGGTCTGAAGTTAGGCGTGCCATTGCTGACATCCAAAATGACTTAGAAAGTACTATCCGAAGGAGTAACACT
ACCGCTATTGCAATGGCCAATGTGACTGATATTCCTCCTGATCTAGTCAACCCAAGTGCAGTTGAATTAGTTTTGGACATCAGAAGAGAATATGCCAATA
AGCTTGAGCAGTCCCATGAACGGGCAAGGAAGCTTCGAGCAGACCTGGCTGTCGAGGAGCACCGTGGTTTAGAGCTTAGTAGAATCTTGAAGGAAGTGCT
TCCACATCCCAGGACGTCAAATGTGCAGAAACCCCGTGCTGGAAGAAAGTCCAGCATTGAAAGAAGGAAGGTGTCAAAACGATTAACAGATGAAGCCATG
GCTTATTTTGATGAATGTGTGTCGCTGTCAACATTTGATAGCTCTGACTTCTCATCGCCAGAGGATCCACCAATAAACTTTGTTGGTGTTTCTTCCCCTG
TTGGTGATTGTGCATCCTTTTCCCAAGCAAGTTCTAACGCCGCAGCAAACTGCTATCCCAACAGTTTCACTACCAATAAACAGGAATTGGTTAGTGCACA
TAGCCACAGTGCATCAGTGTTGTCAGCCACTGGAAGCAGCAAGGAGCCTACTCTAGATGAAGTCATTCTAAACAGCTCAGAAACACCATACAGTCAGAGG
TTTCAGTTTTCTTTTGCACGCAAGCCAAATGATTCCATCGAAGTTCAGCAAGATATTAGGAAGTACGTCAAAAGCTTTGAGAAAGACATGGAAAAAACTG
GCGTCAATTCAAAGATTTTAAGATCAAATCACTTCGATCTGGATGAATATAATTCGCAGGCCTCGAGGCAAAACTTTTTATTTGACACAGTGTTCCTTAA
TAACAGAATTCAGTCGGGTAGTATGCTACTATGTGATGGAGGCATGGGAGTTTCATTTTCGCCTTTTGCTGCCGTAATCTAA
AA sequence
>Potri.010G247100.1 pacid=42799847 polypeptide=Potri.010G247100.1.p locus=Potri.010G247100 ID=Potri.010G247100.1.v4.1 annot-version=v4.1
MAMAAFKSTSRRATTTTSAATSDKETSTKQHALPRKTVPSRRSRSVSAVSRSHLVDTCSTTRTAAEGTATGSTDFLIKRDNPLYWSNVSPPGKEVSEVVA
DKEESKSAPTKPNAVGDSRRGRSVSRKADAGRNVSGIGRSLSRGPVSRGRSVSRPPGSGGHFVNSESDAEQEGSSLMKYINGSGGLSDVSNAGRNSDLAR
RSYDSKFEKMRSSPMRSDGSAADLPSLPFRSWEDGGLGSSFSEAEERTIKAVCEQMQSFQGDNLGDGTSSRIYETVRSEVRRAIADIQNDLESTIRRSNT
TAIAMANVTDIPPDLVNPSAVELVLDIRREYANKLEQSHERARKLRADLAVEEHRGLELSRILKEVLPHPRTSNVQKPRAGRKSSIERRKVSKRLTDEAM
AYFDECVSLSTFDSSDFSSPEDPPINFVGVSSPVGDCASFSQASSNAAANCYPNSFTTNKQELVSAHSHSASVLSATGSSKEPTLDEVILNSSETPYSQR
FQFSFARKPNDSIEVQQDIRKYVKSFEKDMEKTGVNSKILRSNHFDLDEYNSQASRQNFLFDTVFLNNRIQSGSMLLCDGGMGVSFSPFAAVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50350 unknown protein Potri.010G247100
[exp]
0 1
AT1G11680 EMB1738, CYP51A... embryo defective 1738, CYTOCHR... Potri.001G068400
[exp]
5.47 0.9048 CYP51.2
AT1G51600 GATA GATA28, TIFY2A,... GATA TRANSCRIPTION FACTOR 28, ... Potri.010G251600
[exp]
5.91 0.8860 ZML1.1
AT5G32450 RNA binding (RRM/RBD/RNP motif... Potri.019G037600
[exp]
6.32 0.9013
AT3G66658 ALDH22A1 aldehyde dehydrogenase 22A1 (.... Potri.008G106000
[exp]
6.70 0.9041 ALDH22.1
AT5G07720 Galactosyl transferase GMA12/M... Potri.012G068300
[exp]
6.92 0.8863
AT2G20840 Secretory carrier membrane pro... Potri.019G104000
[exp]
9.16 0.9041
AT3G58100 PDCB5 plasmodesmata callose-binding ... Potri.013G119500
[exp]
9.48 0.8916
AT5G44560 VPS2.2 SNF7 family protein (.1.2) Potri.011G154700
[exp]
17.32 0.8811
AT3G14410 Nucleotide/sugar transporter f... Potri.001G394500
[exp]
17.88 0.8500
AT5G04160 Nucleotide-sugar transporter f... Potri.006G046600
[exp]
24.65 0.8839

Potri.010G247100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.