Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27110 290 / 2e-92 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38180 221 / 9e-66 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G38170 208 / 7e-63 FRS9 FAR1-related sequence 9 (.1) AT4G15090 149 / 9e-40 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 148 / 1e-39 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT4G19990 132 / 2e-34 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT1G76320 132 / 6e-34 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G06250 126 / 5e-32 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 125 / 8e-32 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT2G32250 119 / 2e-29 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011800 [exp] 503 / 3e-173 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.009G158400 [exp] 333 / 3e-107 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 328 / 2e-105 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.011G145800 [exp] 246 / 4e-75 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209100 [exp] 241 / 4e-75 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.009G170100 [exp] 229 / 8e-69 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 228 / 1e-68 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 224 / 4e-67 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.006G020700 [exp] 152 / 5e-41 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 133 / 7e-35 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [poplar] [flax] SWIM SWIM zinc finger
Representative CDS sequence Show only first row Show all	>Potri.010G247300.2 pacid=42799585 polypeptide=Potri.010G247300.2.p locus=Potri.010G247300 ID=Potri.010G247300.2.v4.1 annot-version=v4.1 ATGATCGAGTGGCTTCAAGCTATGTATAATGCTCGCCAACAGTGGGCACCAGTTTATTTTCGTAACACCTTTGCTGCCCTTTCTTCATATCATGGTATCA GCTCCTTCTTTGATGGGTATGTGAATCAACAGACCACAATACCTTTGTTCTTTAAACAGTATGAACTTGCGCTCGAACATTCTCTGGAAAAGGAAATAGA AGCAGCCTACGATACAATTTGCACCGCTCCTGTACTTAAGACGCCATCGCCAATGGAACTACAGGCTGCAAATATTTATACCAAGGAAGTATTCGCAAAG TTTCAGGAAGAACTAGTTGAAGCTTTTGTATATACAGCAAATAAGATCGAGCGAGATGGGATGGCCACCAAGTACAGGGTTGCAAAATATGAGCATAATG ACAGGGCATGCATAGTGACGTTGAGCACATCTGAGATGCAAGCAAGTTGTAGCTGCCAGATGTTTGAATATTGTGACGTTCTTTGTAGACATGTATTGAC TGTCTTCACTGTAACAAACGTTCTTACCCTTCCGTCCCATTACATATTGAAGCGATGGACAAGGAATGCAAAAACTTGGATTGGGTCAGAGGAACAGAGT GCAGATTCACAAGGTCTTGATGCTCTGACCTCTCGCTTTAACAATCTGTGCCTTGAAGCTATTAAATATGTAGAGGAAGGTGCAATTGCCATTGAGACTT GCAATGCAGCGATAAGTAATTTAAAAGAGGGTGGAAAAAAGATTGTTTCTGTGAAGAAAAGCGTTGCTAAAGTCGAACCTCCTAGCTCGCATGGCAGTGG AAATAATCAAGAAGAAAACAACAAGAAAACCCCTACTACTCCTCGTGAAATGATCCCGTCATTGTGGCCTTGGCAGAATGCTATGCCACCTCGGTTTAAT CTTAATGATGGGTCCATGACTTTGACACCAGCTGGTGAAGTGGCTGCCATCAACTTGAAGGTATACTCGTCTTCTCTTTTAATGAGCTCTTGA
AA sequence Show only first row Show all	>Potri.010G247300.2 pacid=42799585 polypeptide=Potri.010G247300.2.p locus=Potri.010G247300 ID=Potri.010G247300.2.v4.1 annot-version=v4.1 MIEWLQAMYNARQQWAPVYFRNTFAALSSYHGISSFFDGYVNQQTTIPLFFKQYELALEHSLEKEIEAAYDTICTAPVLKTPSPMELQAANIYTKEVFAK FQEELVEAFVYTANKIERDGMATKYRVAKYEHNDRACIVTLSTSEMQASCSCQMFEYCDVLCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTWIGSEEQS ADSQGLDALTSRFNNLCLEAIKYVEEGAIAIETCNAAISNLKEGGKKIVSVKKSVAKVEPPSSHGSGNNQEENNKKTPTTPREMIPSLWPWQNAMPPRFN LNDGSMTLTPAGEVAAINLKVYSSSLLMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.010G247300 [exp]	0	1
					Potri.003G162550 [exp]	45.69	0.5969
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222550 [exp]	54.77	0.6264
					Potri.006G226200 [exp]	74.01	0.6049
AT5G05800			unknown protein		Potri.004G230401 [exp]	76.05	0.5598
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.013G089900 [exp]	107.47	0.5885
AT5G36930			Disease resistance protein (TI...		Potri.010G231250 [exp]	124.59	0.5871
AT5G50011		CPuORF37	conserved peptide upstream ope...		Potri.005G158000 [exp]	144.13	0.5896
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	144.67	0.6032
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040550 [exp]	167.95	0.5827

Compare expression of checked genes

Potri.010G247300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.