Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 253 / 2e-76 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G04720 249 / 4e-76 CPK21 calcium-dependent protein kinase 21 (.1) AT1G50700 248 / 6e-76 CPK33 calcium-dependent protein kinase 33 (.1) AT5G12180 248 / 9e-76 CPK17 calcium-dependent protein kinase 17 (.1) AT3G20410 248 / 1e-75 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04740 248 / 1e-75 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G23650 246 / 4e-75 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT5G04870 248 / 8e-75 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 246 / 2e-74 CPK20 calcium-dependent protein kinase 20 (.1) AT5G23580 244 / 2e-74 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011541 [exp] 822 / 0 AT3G10660 201 / 7e-58 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.001G097400 [exp] 253 / 7e-78 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 253 / 1e-77 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.010G244800 [exp] 253 / 4e-77 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 251 / 3e-76 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.009G069200 [exp] 249 / 4e-76 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 249 / 6e-76 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.008G014700 [exp] 248 / 2e-75 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 248 / 4e-75 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033400 [exp] 842 / 0 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10034860 [exp] 841 / 0 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10008958 [exp] 256 / 7e-79 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10017537 [exp] 254 / 7e-79 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10029346 [exp] 255 / 7e-78 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10028862 [exp] 256 / 8e-78 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10016200 [exp] 256 / 8e-78 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10000889 [exp] 252 / 4e-77 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10040071 [exp] 252 / 4e-77 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021531 [exp] 251 / 1e-76 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.010G247400.1 pacid=42800304 polypeptide=Potri.010G247400.1.p locus=Potri.010G247400 ID=Potri.010G247400.1.v4.1 annot-version=v4.1 ATGGGACAGGAAACAAGAAAACTTTTAGATGAATATGAAGTTTCAGACATTCTAGGAAGAGGTGGGTTCTCAGTTGTCAGGAGAGGTATACTGAAGACAA GTGGAGATAGGAGGCAGGTGGCCATCAAGACATTGAAAAGATTAGGCCCGTCAACTCCATCAGGAATTCCGAGATCTCGCGGTGATGGTGAGAGAGGCAT TGCTTCTTTCAAATTCCCAACATGGAGGCAGGTTTCAGTATCTGATGCTTTACTTACAAATGAAATATTGGTTATGAGAAAGATAGTAGAAAATGTATCG CCGCATCCGAATGTGATTGACCTCTATGATGTTTATGAGGATCAAAATGGGGTGCATCTTGTGTTGGAGCTTTGTTCTGGTGGAGAGCTGTTTGACAGGA TTGTCGCTCGAGACAGGTACTCTGAGAGTGAAGCAGCAGCTGTGGTTAGGCAGATTGCAGAAGGACTGGGAGCTCTTCACAGGGCTAATATTGTTCATAG AGACTTGAAGCCAGAGAACTGTCTTTTCTTGAATGAAAACGATGATTCTACTTTGAAGATTATGGACTTTGGATTGAGTTCTGTCGAAGAGTTCACCGAT CCAGTTGTTGGGTTGTTTGGTTCCATTGATTATGTCTCACCAGAAGCTCTTTCTCAAGGCAGAATTAGCTCTAAAACTGATATGTGGTCTTTGGGAGTAA TCTTGTATATCCTGCTCTCAGGGTACCCGCCTTTCATTGCTCAGTCCAACAAGCAGAAACAACAAGTGATACTGGCTGGTGATTTCACTTTCTATGAGAA GACGTGGAAGAACATTACTTCATCAGCAAAACAACTGATCACTGATCTCCTGCAAGTTGATCCCGAAAGGAGACCGAGTGCTCAAGATGTTTTAAATCAT CCTTGGGTGATAGGGGATTCTGCAAAAGAGGAACAAATGGACCCCGAGATTGTCTCAAGGCTGCAGAGTTTCAATGCCCGTCGCAAATTCCGAGCTGCAG CAATAGCCAGTGTGTGGAGTAGCACAATTTTCTTAAGAACCAAAAAGTTGAAATCTTTACTAGGATCACATGACCTCAAGGAGGATGAAATTGAGAAACT CAGGCTACATTTTTCCAAATTGTGTGCAAAAGGTGATAATGCTACTCTATCCGAATTCGAGGAGGTGCTGAAAGCAATGAACATGTCGTTACTGATCCCT ATGGCACCCCGCATCTTTGATCTATTTGACAACAACCGTGATGGAACAGTTGACATGAGGGAGATTCTTTGTGGTTTCTCCAGCCTCAGGAACTCTCAAG GGGATGATGCTCTCCGTCTGTGCTTCCAGATGTATGATACAGACCGATCCGGGTGCATCACGAAGGAAGAAGTAGCATCAATGCTCAGAGCTTTGCCCGA GGACTGCCTTCCAGCAGATATAGCAGAACCGGGGAAATTAGACGAGATATTTGATAGGATGGATGCCAACAGTGATGGAAAAGTCACCTTTGATGAGTTC AAAGCTGCAATGAAAAGGGACAGTTCGCTTCAGGATGTAGTCCTCTCATCTCTTCGGCAACAATAA
AA sequence Show only first row Show all	>Potri.010G247400.1 pacid=42800304 polypeptide=Potri.010G247400.1.p locus=Potri.010G247400 ID=Potri.010G247400.1.v4.1 annot-version=v4.1 MGQETRKLLDEYEVSDILGRGGFSVVRRGILKTSGDRRQVAIKTLKRLGPSTPSGIPRSRGDGERGIASFKFPTWRQVSVSDALLTNEILVMRKIVENVS PHPNVIDLYDVYEDQNGVHLVLELCSGGELFDRIVARDRYSESEAAAVVRQIAEGLGALHRANIVHRDLKPENCLFLNENDDSTLKIMDFGLSSVEEFTD PVVGLFGSIDYVSPEALSQGRISSKTDMWSLGVILYILLSGYPPFIAQSNKQKQQVILAGDFTFYEKTWKNITSSAKQLITDLLQVDPERRPSAQDVLNH PWVIGDSAKEEQMDPEIVSRLQSFNARRKFRAAAIASVWSSTIFLRTKKLKSLLGSHDLKEDEIEKLRLHFSKLCAKGDNATLSEFEEVLKAMNMSLLIP MAPRIFDLFDNNRDGTVDMREILCGFSSLRNSQGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEDCLPADIAEPGKLDEIFDRMDANSDGKVTFDEF KAAMKRDSSLQDVVLSSLRQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.010G247400 [exp]	0	1
					Potri.003G103100 [exp]	3.74	0.9339
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	5.29	0.9490
					Potri.013G070350 [exp]	10.00	0.9471
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	16.27	0.9437	CYP716B4
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	16.49	0.9438
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413800 [exp]	18.16	0.9417
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	24.24	0.9400
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	24.69	0.9386
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	26.66	0.9389
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	27.56	0.9391	2OGox3

Compare expression of checked genes

Potri.010G247400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.