Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10710 610 / 0 RHS12 root hair specific 12 (.1) AT5G04960 592 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 440 / 1e-148 ATPME1 pectin methylesterase 1 (.1) AT5G49180 397 / 3e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14300 408 / 9e-132 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G53370 385 / 4e-127 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 384 / 4e-127 ATPMEPCRA methylesterase PCR A (.1) AT3G05610 386 / 1e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 386 / 8e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 379 / 6e-125 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011200 [exp] 1019 / 0 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.003G072700 [exp] 488 / 2e-167 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 460 / 4e-156 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 444 / 6e-151 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.018G051200 [exp] 409 / 3e-136 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 408 / 4e-136 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 402 / 2e-134 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.010G010464 [exp] 400 / 3e-133 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 394 / 1e-131 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033399 [exp] 627 / 0 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 590 / 0 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10003934 [exp] 451 / 6e-152 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10038917 [exp] 396 / 6e-132 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 390 / 1e-128 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 388 / 5e-128 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 385 / 3e-127 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 380 / 5e-127 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037456 [exp] 376 / 8e-127 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10013344 [exp] 379 / 4e-125 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.010G247600.1 pacid=42797241 polypeptide=Potri.010G247600.1.p locus=Potri.010G247600 ID=Potri.010G247600.1.v4.1 annot-version=v4.1 ATGTCTTCTCTCAAAGCCTATGGCAAACTTGACGAGGCTGAGCAAGCACGGCTCGAGGCTCGTCGAAGAACCCGGAAAAGAATCACCATCATAAGCCTTT CTTCAATACTTCTTGTTGCCATTGTTGTTGCTGCTGTGGTGGGGACTCATGCTTCTAGTGGAAACTCAAAGAAGGGTGGAGCTGATAAGTCACTTTCTAC ATCAGTGAAAGCTGTTTGTGATGTCACATTGTACAAGGATTCTTGTTACAATAGCCTTGCTCCTGTGGCTAAACCAGACCAGCTTCAACCTGAGGAGCTT TTCAAATTGGCAATCCAAGTGGCCAAGAATGAATTATCAAAAGCTTCTCAGCATTTCTCCAAGGATGGAGGGGTGCTTTACAATGGTGTCAAGGATAATA TGACAATTACAGCCTTGGAAAATTGCCAAGAACTTTTGAGTTTGGCATTGGACCATCTTGATAACTCATTGGAAGCGGGTCATGGTGTCAATGTGATTGA TATTGTGGATGATCTAAGAAGTTGGCTAAGTACTTCGGGTACTTGCTATCAAACATGCATTGATGGCCTTTCGGAGACGAAATTAGAGGCTACTGCTCAT GATTATCTCAAGAATTCAAGTGAATTGACTAGCAATAGCTTGGCAATTATCACTTGGATTTCCAAGGTTGCAAGCTCAGTGAACATCCATAGGCGCTTAA TGAACTACGAAGACCAAGATATGCCAAAGTGGCTGCATCCAGAAGATCGCAAACTACTTCAAAGTTCAGATTTGAAGAAGAAGGCTGATGTTGTTGTGGC TAAAGATGGGTCTGGAAAGTACAAAAGAATCAGCGATGCCCTAAAAAATGTTCCTGAAAAAAGCAAGAAGAGGTATGTGATCTATGTGAAGAAAGGAATT TATTTCGAAAATGTTCGTGTCGAGAAGAAGCAATGGAATGTCATGATGATTGGTGATGGAATGAAGGAAACAATTGTATCAGCAAGCCTGAACGTTGTGG ATGGAACTCCTACATTCTCAACTGCAACATTTGCTGTGTTTGGGAAGGGATTCATTGCTAGAGATATGGGGTTCCGTAACACAGCTGGTGCAATCAAGCA TCAGGCAGTTGCCTTGATGTCAAATGCTGATATGTCGGCCTTTTACAGATGCAGCATGGATGCTTTTCAGGACACTCTCTACGCACATGCCAATCGGCAA TTCTACCGCGAATGCAACATATATGGAACAGTTGATTTCATCTTTGGAAATTCAGCTGTTGTCATCCAAAGCAGCAGCATACTACCCCGGAAACCTATGC AAGGCCAACAGAACACCATCACTGCACAAGGCAAGATTGACCCTAATCAAAATACTGGAATTTCAATTCAGAACTGTACCATTTGGCCTTACGGCGACTT GAGCTCTGTCAAAACTTTCCTTGGCCGTCCTTGGAAGAATTACTCAACAACTGTATTCATGCGTTCTATGATGGGGAGCTTGATCGACCCTGCTGGATGG TTGCCATGGACAGGAAATACAGCACCTCCTACCATTTTCTATTCTGAATTTGAGAATTTCGGGCCTGGTGCTTCAACAAAGAACAGAGTTAAATGGAAGG GCTTGAAAACCATCACCAATAAACAAGCTAGTAAATTTACAGTGAAGGCATTCATACAGGGAGAAGAGTGGCTCACAGGCACTGGTATTAGCTACAAACC TGGTCTCTGA
AA sequence Show only first row Show all	>Potri.010G247600.1 pacid=42797241 polypeptide=Potri.010G247600.1.p locus=Potri.010G247600 ID=Potri.010G247600.1.v4.1 annot-version=v4.1 MSSLKAYGKLDEAEQARLEARRRTRKRITIISLSSILLVAIVVAAVVGTHASSGNSKKGGADKSLSTSVKAVCDVTLYKDSCYNSLAPVAKPDQLQPEEL FKLAIQVAKNELSKASQHFSKDGGVLYNGVKDNMTITALENCQELLSLALDHLDNSLEAGHGVNVIDIVDDLRSWLSTSGTCYQTCIDGLSETKLEATAH DYLKNSSELTSNSLAIITWISKVASSVNIHRRLMNYEDQDMPKWLHPEDRKLLQSSDLKKKADVVVAKDGSGKYKRISDALKNVPEKSKKRYVIYVKKGI YFENVRVEKKQWNVMMIGDGMKETIVSASLNVVDGTPTFSTATFAVFGKGFIARDMGFRNTAGAIKHQAVALMSNADMSAFYRCSMDAFQDTLYAHANRQ FYRECNIYGTVDFIFGNSAVVIQSSSILPRKPMQGQQNTITAQGKIDPNQNTGISIQNCTIWPYGDLSSVKTFLGRPWKNYSTTVFMRSMMGSLIDPAGW LPWTGNTAPPTIFYSEFENFGPGASTKNRVKWKGLKTITNKQASKFTVKAFIQGEEWLTGTGISYKPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.010G247600 [exp]	0	1
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.008G011200 [exp]	1.00	0.8951
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Potri.007G071200 [exp]	4.89	0.8885
					Potri.001G388600 [exp]	16.06	0.8646	PPO5
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.006G058100 [exp]	24.24	0.8537	Pt-CYP712.3
AT5G59520		ZIP2	ZRT/IRT-like protein 2 (.1)		Potri.009G034600 [exp]	25.33	0.7386
AT5G39110			RmlC-like cupins superfamily p...		Potri.013G052100 [exp]	29.46	0.8630
AT3G24020			Disease resistance-responsive ...		Potri.001G054000 [exp]	36.74	0.8559
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.010G159900 [exp]	37.28	0.8493	HIUHASE.2
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	38.98	0.8511
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	45.79	0.8508

Compare expression of checked genes

Potri.010G247600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.