Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10720 746 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 731 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 541 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 509 / 2e-175 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 489 / 5e-168 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 383 / 9e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 381 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 372 / 9e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 369 / 1e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 369 / 1e-121 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011100 [exp] 979 / 0 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.014G127000 [exp] 531 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 516 / 1e-178 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 499 / 2e-171 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 444 / 1e-150 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 396 / 3e-131 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134600 [exp] 394 / 3e-131 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 385 / 5e-128 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 384 / 1e-127 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028882 [exp] 745 / 0 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 732 / 0 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10031470 [exp] 478 / 2e-163 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 476 / 1e-162 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 473 / 2e-162 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 466 / 1e-152 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 395 / 7e-132 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 390 / 1e-129 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 383 / 1e-126 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 384 / 4e-126 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.010G247700.1 pacid=42797607 polypeptide=Potri.010G247700.1.p locus=Potri.010G247700 ID=Potri.010G247700.1.v4.1 annot-version=v4.1 ATGCAACGCCCATTATCATTCTTGATTCTCCTCTTTGCCTTTCTTTCGATCTTTTCACCTTTGTTGATCTCCTCTCAATCTCCACCACCGCCATATTCAC CTTCCAATGCATGCAAATCCACCCTTTATCCTAAGCTTTGTCGTTCAATCTTGACAACCTTTCCTTCATCTTCCAACCCTTACGAGTACAGCAAGTTTTC AGTCAAACAATGCCTTAAACAAGCAAAAAGATTGTCTAAAGTCATCGACTATCACTTAACACACGAAAAACAACTTTCAAAAATGACCCATGAAGAGTTT GGTGCATTGCAGGATTGCCATGAGTTCATGGAACTCAATGTGGACTACTTTGAGACCATATCTAGCGAGCTGGTAGCAGCCGAGTCAATGAGTGATGTGT TGGTTGAGAGAGTCACGAGTCTGCTCAGTGGAGTAGTGACCAATCAACAAACTTGCTATGATGGGCTGGTTCAGTCCAAGAGTAGCATTGTCAGTGCTCT GTCCGTGCCTCTCTCCAATGTTACTCAATTGTACAGTGTGTCTCTAGCTCTGGTCACACATTCGTTGGAGAAGAATTTGAAGAAGAACAAGAGGAGAAAA GGGTCTCCTCAAGGAACCGTGACAAGGGGGGTTCGTGAACCTCTTGAGACTCTTATCAAGGCTTTAAGGAAAACATCGTCCTGCCATGAAACTCGCAATT GCCACAGGGGAGAACGCATCCTTTCTGATGATGCGGGGGACGATGGGATTCTTGTAAATGATACGGTGATTGTTGGCCCTTATGGTACTGACAACTTCAC AACCATTGGAGATGCCATTGCCTTTGCTCCAAATAACTCAAAACCTGAAGATGGCTACTTCGTAATATTTGTTAGAGAAGGGATTTATGAGGAGTATGTT GTTGTTCCTAAAAATAAGAAGAATATAGTGCTGATTGGAGAAGGAATTAATCAGACCGTCATAACGGGAAACCATAGTGTCATTGATGGCTGGACAACCT TTAATTCTTCGACTTTCGCTGTTTCTGGGGAGCGATTTGTTGGAATAGACATGACGTTCAGGAACACGGCAGGTCCTGAGAAGCACCAAGCAGTAGCTCT GAGGAACAATGCTGACCTCTCCACATTTTATCGGTGCAGCTTTGAAGCCTATCAGGATACTCTTTACGTGCATTCCTTGAGGCAATTCTACAGGGAATGT GATGTATACGGAACTGTAGATTTCATTTTCGGAAATGCTGCCGCTGTTTTTCAGAACTGCAATTTATATGCTCGCAAGCCAATGCTTAACCAGAAGAATG CCTTCACTGCGCAAGGTCGTACTGATCCAAACCAAAATACTGGCATCTCCATTCACAATTGCACGATTGAAGCTGCACCTGATTTGGCTATGGACAGGAA CTCGACGGACAGTAACTTGACTTTGAACTTTTTGGGGCGACCTTGGAAGGAGTACTCTAGAACTGTAATCATGCAATCGTACATCGGAGAACTGATTCAG CCGGTTGGATGGCTAGAATGGAACGGAACTGTTGGATTAGACACCATTTACTATGGTGAGTTTCAGAATTATGGGCCTGGTGCAAACACTAGCAGGAGAG TGCAATGGCCTGGTTTTAATCTGATGAATGCTACACAAGCTGTGAATTTTACCGTCTACAATTTCACAATGGGGGATACTTGGTTGCCTTACACTGACGT ACCCTTCTCTGGAGGACTAGTTTGA
AA sequence Show only first row Show all	>Potri.010G247700.1 pacid=42797607 polypeptide=Potri.010G247700.1.p locus=Potri.010G247700 ID=Potri.010G247700.1.v4.1 annot-version=v4.1 MQRPLSFLILLFAFLSIFSPLLISSQSPPPPYSPSNACKSTLYPKLCRSILTTFPSSSNPYEYSKFSVKQCLKQAKRLSKVIDYHLTHEKQLSKMTHEEF GALQDCHEFMELNVDYFETISSELVAAESMSDVLVERVTSLLSGVVTNQQTCYDGLVQSKSSIVSALSVPLSNVTQLYSVSLALVTHSLEKNLKKNKRRK GSPQGTVTRGVREPLETLIKALRKTSSCHETRNCHRGERILSDDAGDDGILVNDTVIVGPYGTDNFTTIGDAIAFAPNNSKPEDGYFVIFVREGIYEEYV VVPKNKKNIVLIGEGINQTVITGNHSVIDGWTTFNSSTFAVSGERFVGIDMTFRNTAGPEKHQAVALRNNADLSTFYRCSFEAYQDTLYVHSLRQFYREC DVYGTVDFIFGNAAAVFQNCNLYARKPMLNQKNAFTAQGRTDPNQNTGISIHNCTIEAAPDLAMDRNSTDSNLTLNFLGRPWKEYSRTVIMQSYIGELIQ PVGWLEWNGTVGLDTIYYGEFQNYGPGANTSRRVQWPGFNLMNATQAVNFTVYNFTMGDTWLPYTDVPFSGGLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10720			Plant invertase/pectin methyle...		Potri.010G247700 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051000 [exp]	1.73	0.8619
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	3.31	0.8881
					Potri.006G038100 [exp]	6.00	0.8525
					Potri.003G204475 [exp]	9.16	0.8128
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	11.74	0.8482
					Potri.009G111815 [exp]	13.78	0.8311
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.009G112061 [exp]	17.74	0.8322
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	18.33	0.7911
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.004G042600 [exp]	21.49	0.7682
AT3G60750			Transketolase (.1.2)		Potri.010G224600 [exp]	22.80	0.7523

Compare expression of checked genes

Potri.010G247700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.