Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04980 552 / 0 DNAse I-like superfamily protein (.1.2) AT5G65090 500 / 5e-175 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 431 / 4e-146 CVL1 CVP2 like 1 (.1.2) AT3G63240 423 / 2e-143 DNAse I-like superfamily protein (.1) AT2G37440 395 / 8e-134 DNAse I-like superfamily protein (.1.2) AT1G05470 355 / 4e-116 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT4G18010 269 / 5e-83 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 261 / 3e-82 DNAse I-like superfamily protein (.1) AT1G34120 259 / 2e-79 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 252 / 3e-76 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011000 [exp] 848 / 0 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 516 / 4e-180 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 503 / 9e-175 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 444 / 1e-151 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 442 / 1e-150 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 437 / 4e-149 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 431 / 2e-146 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 317 / 4e-103 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 295 / 1e-94 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028884 [exp] 662 / 0 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 652 / 0 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 647 / 0 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 427 / 2e-149 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10039352 [exp] 429 / 5e-145 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10024041 [exp] 431 / 4e-136 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10006904 [exp] 404 / 8e-136 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 395 / 4e-133 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10041708 [exp] 384 / 9e-129 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 397 / 5e-127 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.010G247800.1 pacid=42796998 polypeptide=Potri.010G247800.1.p locus=Potri.010G247800 ID=Potri.010G247800.1.v4.1 annot-version=v4.1 ATGACACTGAGGAATCAAGACCAGAACAAGAAGTCTTTTCTTCGAAGATTTTTCTTGCAGAAGGAGGAAAAGGGGAGGAAGGCAGAGAAGGTTTCATTTG ATTCGTCTGAACCACATTCTGATCCATCGCTCAAGTCTCTCTTGTCTCACCAATTAAGCTCTCCAATGCCAAGCAGTCAAGCCCAGTCATTTAGAGTTTT CGTAGCAACATGGAATGTCGGAGGGAAATCTCCTCACAGTGACCTCAACCTAGATGATATTCTTCAGGTTCATGATGAATCAGATATATATGTCTTAGGT TTTCAGGAAATTGTTCCATTGAATGCTGGAAATGTGCTTGTGGCAGAAGACAATGAGCCTGCCGCAAAATGGCTGGCTTTAATCAATCAATCACTGAATA GATCATATAGTGTGGCTTCAAGAGGATCAAAATCACCCCTTTGCAGCTCACTTCGCTTCCAAAAACCTTCTCTTAAAAAGGTCTGTAAGTCTTTCAGGAC TGAGAGTGGACGGAGGCTGAAGACTTGCAATTGCTCTCCCATATTGGAAAGGAAGTATAGCAAGGATTGCTGTGTTTGTCCCCCACCAGCAAATATGACT GAGGATTACTGTTCTTCTGAAGAGGATGAAGATGGACTTAGCAATTATGTATCTACAGAAATTTCCTCTCCAGCTAGTGCCAACCAGATGAAGTACAGCC TTATAACAGGGAAACAAATGGTCGGAATATTTGTTACTGTTTGGGTAAGGAAGGAACTTGTGCAACATGTTAGCCATTTGAGAATCTCTAACGTTGGCCG TGGGATCTTAGGCTGTCTTGGGAACAAGGGGTGTATATCTGTTAGCATGTCTTTCCATCAGACAAGTTTCTGCTTTGTTTGCAGTCACTTGGCGTCAGGA GAGAAAGAAGGAGATGAACTTAGGAGAAATTTGGATGTCATAGAGATACTTAAGAACACACAATTTTCAAGAATTTGCAAATCTCCATATATTCGAGCGC CTGAGAAAATTATGGATCATGATCGGGTAATATGGTTGGGGGACTTGAATTACAGGATAGCTTTGAGCTATTCCGAGACTCGAAAGCTTCTGGAGCAGTA TAACTGGGATGGACTTTTTGACAAAGATCAGCTGAAAATTGAGAGGGAAGCAGGGCGAGTGTTCGGAGGATGGAAAGAGGGAAAGATCTACTTCGCACCA ACATACAAATACTCCTACAACTCGGACATTTACGCTGGAGAGACTATTGAAACACAAAAGAAAAGAAGAACTCCAGCGTGGTGTGATAGAATACTTTGGC ATGGAGGTGGGATACATCAACTATCTTACGTACGCGGAGAGTCCAGGTTTTCTGACCACCGGCCAGTATGCGCAACATTCATAGTAGACGTACAAGTTTC TAATGGTGGATTAAGAAAGGCATTATCAGGCTTTAACATGAAAGTTGCAAGTGAAGAGCACTTGCCTCTAACAAGAAAATAG
AA sequence Show only first row Show all	>Potri.010G247800.1 pacid=42796998 polypeptide=Potri.010G247800.1.p locus=Potri.010G247800 ID=Potri.010G247800.1.v4.1 annot-version=v4.1 MTLRNQDQNKKSFLRRFFLQKEEKGRKAEKVSFDSSEPHSDPSLKSLLSHQLSSPMPSSQAQSFRVFVATWNVGGKSPHSDLNLDDILQVHDESDIYVLG FQEIVPLNAGNVLVAEDNEPAAKWLALINQSLNRSYSVASRGSKSPLCSSLRFQKPSLKKVCKSFRTESGRRLKTCNCSPILERKYSKDCCVCPPPANMT EDYCSSEEDEDGLSNYVSTEISSPASANQMKYSLITGKQMVGIFVTVWVRKELVQHVSHLRISNVGRGILGCLGNKGCISVSMSFHQTSFCFVCSHLASG EKEGDELRRNLDVIEILKNTQFSRICKSPYIRAPEKIMDHDRVIWLGDLNYRIALSYSETRKLLEQYNWDGLFDKDQLKIEREAGRVFGGWKEGKIYFAP TYKYSYNSDIYAGETIETQKKRRTPAWCDRILWHGGGIHQLSYVRGESRFSDHRPVCATFIVDVQVSNGGLRKALSGFNMKVASEEHLPLTRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	1.41	0.9473
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	3.00	0.9294	8
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	5.91	0.9143
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	6.92	0.8844
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	8.36	0.8871
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.011G129700 [exp]	10.09	0.8804	GH3-5,DFL1.2
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	12.96	0.9153
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	13.56	0.8908	PIN8,Pt-PIN2.2
AT3G26760			NAD(P)-binding Rossmann-fold s...		Potri.002G236700 [exp]	14.42	0.8630
AT5G67390			unknown protein		Potri.005G145800 [exp]	17.74	0.8716

Compare expression of checked genes

Potri.010G247800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.