Plant FIBer expression Database

Potri.010G247900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04990 429 / 1e-147 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
AT3G10730 396 / 6e-135 ATSUN2 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 2, SAD1/UNC-84 domain protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G010900
[exp]
765 / 0 AT5G04990 400 / 4e-136 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008933
[exp]
523 / 0 AT5G04990 428 / 5e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Lus10028885
[exp]
508 / 1e-178 AT5G04990 426 / 2e-146 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Lus10034856
[exp]
493 / 7e-173 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0202 GBD PF07738 Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence
>Potri.010G247900.1 pacid=42798636 polypeptide=Potri.010G247900.1.p locus=Potri.010G247900 ID=Potri.010G247900.1.v4.1 annot-version=v4.1
ATGTCGGCTTCAACGGTGTCGATCACGGCGAATCCAGCGTCGGCAAGGCGGAGACCGGTAGTGGTTTCCGACAAGAAATCACCAAGCAACAACATCGAAT
TAGTAGTGCCGAGTGAACAACAAATCAACGGCGGCGGCGGCGGCGGAAAAGCCAAAGTCACCGCCGCTGCGAGTAGGGATCTAAGTCATCACTCGATTCT
GGAGAGGACCGTGAAAGATCTTCAAGTGAAGAAGACGAGTTCGACAATTTCGCCGCGGAGGGCGAGGAAGGTGGAGAAACCGCGGTGGATGAAGGTGGTG
AGTGTGTTTACTAAGAATTTTGTGCTTTTGCTTGTTTTGGCAGGGTTAGTGCAGATGGTTAGGAAATTGGCTGTGAAATCAGGGGGTATTGAAAGTGCTA
GTGTGGGGACACAAATGGGGTTATCTGAATTTGATGGGAGGATAGCGGAAATGGAGTCAATGGTGAAAACCGCGGTGAAAATGATCCAGGTTCAAGTAGA
AGTTGTTGATAAGAAGATCGAGAGTGAAGTCGGTGGGTTAAGAAGGGAAATGAGCAAGAAGATTGATGATAAAGGTGTGATCTTGGAGAAGGAGTTGAGG
AAATTAGTGGAGAGAAGTGAAGGGTTGGAAAAGAAAATTGGAGAGTTGAAAGCTGGTGATTGGTTGTCGAAGGAGGATTTTGAGAAGTTCTATGAGCAGT
TTAAGAAGGCAAAGGGTGGGGAATTTGATGGGAGTGATGTGAGTTTGGATGATATAATGGTGTATGCGAGGGAGATAGTGCAGAAAGAGATTGAGAAGCA
TGCGGCTGATGGGCTTGGGAGGGTGGACTATGCGCTGGCAACTAGTGGTGGAATGGTTGTGAAGCATTCTGATCCCTATATGGCTGGGAGAGGGGTTAAC
TGGTTCTTGAAGGGCAGAGGGGTTCATCCAAATGCTGATGAGATGCTAAAACCAAGTTTTGGGGAGCCTGGGAAGTGCTTTGCTTTGAAGGGAAGTAGTG
GGTTTGTCCAGATTAAGCTGCGAGGTGCTATTGTTCCTGAAGCTGTTACGCTGGAACACGTTGCTAAGAGTGTGGCTTATGACAGGTCAACTGCACCTAA
GGACTGCCGGGTGTCTGGGTGGCTGCAGAACCGCGATCTTCATACAGCAGATGATGAAGAGAAGATGCTTCTTTTAACAGAGTTTACTTATGACCTCGAG
AAAAGTAACGCACAGACCTTCAATGTATTGGACAATACAGCCTCTGGACTTGTTGACACAGTGAGACTGGACTTCACATCTAACCATGGAAGCCCCACAC
TTACCTGCATTTATCGCTTGAGGGTACATGGTTATGAACCTGATCCTTCTTCAATGACGGCAATGCAGCCTTGA
AA sequence
>Potri.010G247900.1 pacid=42798636 polypeptide=Potri.010G247900.1.p locus=Potri.010G247900 ID=Potri.010G247900.1.v4.1 annot-version=v4.1
MSASTVSITANPASARRRPVVVSDKKSPSNNIELVVPSEQQINGGGGGGKAKVTAAASRDLSHHSILERTVKDLQVKKTSSTISPRRARKVEKPRWMKVV
SVFTKNFVLLLVLAGLVQMVRKLAVKSGGIESASVGTQMGLSEFDGRIAEMESMVKTAVKMIQVQVEVVDKKIESEVGGLRREMSKKIDDKGVILEKELR
KLVERSEGLEKKIGELKAGDWLSKEDFEKFYEQFKKAKGGEFDGSDVSLDDIMVYAREIVQKEIEKHAADGLGRVDYALATSGGMVVKHSDPYMAGRGVN
WFLKGRGVHPNADEMLKPSFGEPGKCFALKGSSGFVQIKLRGAIVPEAVTLEHVAKSVAYDRSTAPKDCRVSGWLQNRDLHTADDEEKMLLLTEFTYDLE
KSNAQTFNVLDNTASGLVDTVRLDFTSNHGSPTLTCIYRLRVHGYEPDPSSMTAMQP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04990 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN... Potri.010G247900
[exp]
0 1
AT4G16143 IMPA-2 importin alpha isoform 2 (.1.2... Potri.008G214100
[exp]
1.73 0.8628
AT1G04850 ubiquitin-associated (UBA)/TS-... Potri.001G316400
[exp]
2.00 0.8905
AT4G36520 Chaperone DnaJ-domain superfam... Potri.002G033800
[exp]
2.82 0.8663 AUL1.3
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Potri.005G112800
[exp]
4.47 0.8357
Potri.012G074300
[exp]
6.63 0.8324
AT5G52280 Myosin heavy chain-related pro... Potri.015G143800
[exp]
8.24 0.8595
AT5G20600 unknown protein Potri.012G036500
[exp]
8.48 0.8574
AT1G06530 PMD2 peroxisomal and mitochondrial ... Potri.002G060200
[exp]
10.24 0.8583
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Potri.004G219100
[exp]
10.24 0.8539
AT1G07980 CCAAT NF-YC10 "nuclear factor Y, subunit C10... Potri.009G012300
[exp]
17.14 0.8243

Potri.010G247900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.