Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13750 144 / 2e-41 ZIFL1 zinc induced facilitator-like 1 (.1.2.3) AT3G43790 142 / 3e-40 ZIFL2 zinc induced facilitator-like 2 (.1.2.3) AT5G13740 142 / 3e-40 ZIF1 zinc induced facilitator 1 (.1) AT5G13940 61 / 8e-11 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010600 [exp] 188 / 2e-57 AT5G13750 630 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.016G024400 [exp] 149 / 7e-43 AT5G13750 588 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.006G026200 [exp] 144 / 5e-41 AT5G13750 572 / 0.0 zinc induced facilitator-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034847 [exp] 168 / 8e-50 AT5G13750 664 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033392 [exp] 167 / 2e-49 AT5G13750 659 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037341 [exp] 170 / 5e-49 AT5G13750 640 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033391 [exp] 166 / 6e-49 AT5G13750 642 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034794 [exp] 165 / 9e-49 AT5G13750 645 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033338 [exp] 163 / 5e-48 AT5G13750 646 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10035766 [exp] 160 / 1e-46 AT5G13750 622 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037425 [exp] 145 / 5e-41 AT3G43790 687 / 0.0 zinc induced facilitator-like 2 (.1.2.3) Lus10034846 [exp] 135 / 1e-37 AT5G13750 600 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10035765 [exp] 101 / 1e-25 AT5G13740 224 / 2e-70 zinc induced facilitator 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G248401.7 pacid=42797528 polypeptide=Potri.010G248401.7.p locus=Potri.010G248401 ID=Potri.010G248401.7.v4.1 annot-version=v4.1 ATGTACTCAACAGTCTTCGAGCAACATGGCTGCAGTGGGTTCTTGCACGCAGTGTTTGCTGTGACAAGTAGAAAGAAGAAAGATGATACAGAAAGGAAAC CACCTTCCAAGGAAAGCCTCTTAAAGAATTGGCCTTTGATGTCCTCCAGCATTGTCTATTGTGTTTTCTCACTTCATGACATGGCTTACTCTGAGATATT CTCATTATGGGCTGAAAGCCTTAGAAAACTTGGAGGGCTGGGCTACACAACTGGGGATGATGGTGAAGTTCTGGAAATCACAGGGCTCGGCCTCAGCGTG GTGATCAGTTTAGCATCTACAACCAGGAGTTTTCTTTCTGTGTCAATCGCAACTTGCTTGTTTATTCTGCAAAACAATGCTGTGGATCGAAACCAAAGAG GAGCTGCTAATGGCGTTGCTATGACAGCAGTGTCTCTTTTCAAAGCGGTCGGTCCTGCTGGAGGTGGTTCGCTATTATCTTGGGCACAAAAGCGCCAAAA TGCTGCATCCCTTCCAGATAGAATATTCTACAATTTTCCCATCGCTATGAATCAACCTGACCTTTTGATGTCCTAG
AA sequence Show only first row Show all	>Potri.010G248401.7 pacid=42797528 polypeptide=Potri.010G248401.7.p locus=Potri.010G248401 ID=Potri.010G248401.7.v4.1 annot-version=v4.1 MYSTVFEQHGCSGFLHAVFAVTSRKKKDDTERKPPSKESLLKNWPLMSSSIVYCVFSLHDMAYSEIFSLWAESLRKLGGLGYTTGDDGEVLEITGLGLSV VISLASTTRSFLSVSIATCLFILQNNAVDRNQRGAANGVAMTAVSLFKAVGPAGGGSLLSWAQKRQNAASLPDRIFYNFPIAMNQPDLLMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.010G248401 [exp]	0	1
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.003G164600 [exp]	3.16	0.8455
					Potri.013G078001 [exp]	3.16	0.8209
					Potri.001G371500 [exp]	8.12	0.8370
AT2G31470		DOR	DROUGHT TOLERANCE REPRESSOR, F...		Potri.001G458400 [exp]	9.00	0.7981
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	10.39	0.8356
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	11.66	0.8047
AT2G21860			violaxanthin de-epoxidase-rela...		Potri.005G085800 [exp]	13.26	0.7921
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	14.28	0.8203
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.002G167400 [exp]	22.44	0.7851
AT3G01060			unknown protein		Potri.004G125301 [exp]	22.44	0.7212

Compare expression of checked genes

Potri.010G248401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.