Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16880 363 / 3e-127 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 288 / 2e-97 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G69040 64 / 3e-11 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 62 / 1e-10 ACR6 ACT domain repeat 6 (.1) AT2G03730 58 / 2e-09 ACR5 ACT domain repeat 5 (.1.2) AT5G65890 57 / 6e-09 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 46 / 1e-05 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 45 / 3e-05 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010400 [exp] 516 / 0 AT1G16880 359 / 1e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.010G238300 [exp] 282 / 3e-95 AT5G04740 392 / 6e-138 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.008G020700 [exp] 275 / 4e-92 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.012G102200 [exp] 65 / 1e-11 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 64 / 3e-11 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.012G083000 [exp] 64 / 3e-11 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 62 / 6e-11 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 61 / 3e-10 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 60 / 4e-10 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033395 [exp] 392 / 2e-138 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034852 [exp] 377 / 2e-132 AT1G16880 372 / 1e-130 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033394 [exp] 370 / 8e-130 AT1G16880 357 / 9e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034851 [exp] 368 / 6e-129 AT1G16880 351 / 3e-122 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10041543 [exp] 58 / 2e-09 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 56 / 9e-09 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 56 / 9e-09 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 52 / 3e-07 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 49 / 2e-06 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 49 / 3e-06 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G248700.2 pacid=42798873 polypeptide=Potri.010G248700.2.p locus=Potri.010G248700 ID=Potri.010G248700.2.v4.1 annot-version=v4.1 ATGGCTGTGTCCATGGCTTTTGCCAATCTTGCATTTCAGTTTAATAATGTCAAAGTTGGTGAAAATCCCTTGTGTTTTGGCTTGGCTCCTACACAACTTC CTTATTTATGCAAGGAAAGAAGAAGATTGCCATCTTCCAGGACAATAATCATTCCAGGAGCTTCATCGGCTCCAACCATTGAGGATGGAAGTCAAAATGA CACTGATGCAATTCCAACTCCCAAAGTTATAATTGACCAAGACGCCGATCCAGATGCAACCGTGGTGGAGGTAACCTTCGGAGATCGCCTTGGTGCTCTT CTGGATACGATGAACGCGCTTAAAAACCTAGGGCTGAATGTTGTTAAGGCTAATGTCTTTTTGGATTCTTCTGGGAAGCACAACACATTTTCCATCACTA AAGCTAGTACTGGTCGAAAAGTTGATGACCCAGAACTGCTTGAGGCCATTCGTTTGACAATCATAAACAATTTGCTTCAGTATCACCCGGAATCAAGTTC TCAGTTAGCAATGGGGATTGCCTTTGGAGTAGAGCCACCGAAACAGGTTGATGTGGATATAGCAACGCGTGTAAAAGTCAAAGAAGATAGTCCTGACCGA AGCTTGCTTTTTGTGGAGGCAGCTGATCGCCCAGGATTGTTGGTGGATCTTGTAAAGGCTATCACTGACATTAATATTGCTGTTGAATCAGGAGAATTTG ACACTGAGGGGTTGTTGGCCAAGGCAAAATTTCATGTCAGCTACAAGGGTAAAGCCATCAGCAAGCCTCTTCAACTGGTTCTTGCTAACAGTTTGCGATA TTTCTTGAGGCGACCATCGACCGAGGAGGCAAGTTTTTGA
AA sequence Show only first row Show all	>Potri.010G248700.2 pacid=42798873 polypeptide=Potri.010G248700.2.p locus=Potri.010G248700 ID=Potri.010G248700.2.v4.1 annot-version=v4.1 MAVSMAFANLAFQFNNVKVGENPLCFGLAPTQLPYLCKERRRLPSSRTIIIPGASSAPTIEDGSQNDTDAIPTPKVIIDQDADPDATVVEVTFGDRLGAL LDTMNALKNLGLNVVKANVFLDSSGKHNTFSITKASTGRKVDDPELLEAIRLTIINNLLQYHPESSSQLAMGIAFGVEPPKQVDVDIATRVKVKEDSPDR SLLFVEAADRPGLLVDLVKAITDINIAVESGEFDTEGLLAKAKFHVSYKGKAISKPLQLVLANSLRYFLRRPSTEEASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.010G248700 [exp]	0	1
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	2.64	0.9768
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	8.83	0.9518
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	10.09	0.9660
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	12.72	0.9631	CP33.2
					Potri.011G080900 [exp]	16.52	0.9562
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.006G216200 [exp]	20.85	0.9503
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	22.02	0.9592
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	22.80	0.9556
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	26.38	0.9569
AT1G12244			Polynucleotidyl transferase, r...		Potri.004G225600 [exp]	27.12	0.9393

Compare expression of checked genes

Potri.010G248700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.