Plant FIBer expression Database

Potri.010G248900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33840 602 / 0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
AT1G28350 543 / 0 Nucleotidylyl transferase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G010201
[exp]
547 / 0 AT2G33840 462 / 2e-164 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Potri.003G158000
[exp]
45 / 8e-05 AT2G25840 549 / 0.0 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029613
[exp]
632 / 0 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Lus10032773
[exp]
626 / 0 AT2G33840 598 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Lus10009938
[exp]
305 / 1e-103 AT1G28350 290 / 5e-98 Nucleotidylyl transferase superfamily protein (.1)
Lus10030144
[exp]
52 / 7e-08 AT2G33840 57 / 3e-10 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00579 tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence
>Potri.010G248900.2 pacid=42798817 polypeptide=Potri.010G248900.2.p locus=Potri.010G248900 ID=Potri.010G248900.2.v4.1 annot-version=v4.1
ATGGAAGAGAATGACCAAACCCCTCCATCTGAAGAGATGCAATCCCTCACTGTCACCCCTTCAGCTTCATCCTCATCAAATCCCACTACACCGCAGTTGT
TAAGTTTAGAGGAAAGGTTTCAACTTGTGAGAAGCGTTGGTGAAGAATGTATCCAAGAAGATGAACTACGTAATCTTCTCGAGAAAAAACCACTACCCAT
TTGCTATGATGGTTTTGAACCTTCTGGGAGAATGCACATTGCTCAGGGAGTCATGAAGACAATAAATGTCAACAAACTGACTAAAGCTGGTTGCAAAATG
AAAATTTGGATTGCTGATTGGTTTGCACAGCTTAATAACAAAATGGGAGGAGACTTGAAGAAAATTAAAACTGTGGGGGAATATCTTATAGAGATATGGA
AGGCAGTTGGGATGGATATTGATGGAGATAAGGTTGAATTCCTGTGGTCTTCGGATGAAATTAACTCCAGAGCTCATGAGTACTGGCCTCTAGTTATGGA
TATAGCCCGCAGGAACAAGCTTCCTAGGATAATGAGATGTGTTCAAATCATGGGACGTAGTGAGCAGGATGAGTTAACAGCAGCCCAGATTTTCTATCCA
TGCATGCAATGTGCAGACATATTTTTCCTCAAGGCTGACATTTGTCAATTGGGCATGGATCAACGGAAAGTAAATGTCCTTGCAAGAGAATACTGTGATG
ATATCAAGAGGAAAAATAAGCCTATCATTTTATCTCATCACATGCTACCTGGTTTACAGCAAGGGCAAGAAAAGATGTCTAAAAGTGATCCATCTTCTTC
CATCTTCATGGAGGATGAAGAGGTAGAGGTAAAAACTAAGATAAAGAAGGCATACTGCCCCCCACAAATTGTTGAAGGAAATCCTTGTCTGGAATACATT
AAACACATTGTTTTCCCGTGGTTCAATAAGTTCAAGGTGGAACGGAATCCAGAAAATGGTGGAGAGAAGATCTACGAAAGCTTTGAAGAACTTGTCTCTG
ACTATGAAAGTGGCGGATTACATCCGGGTGACCTGAAACCAGCTCTTGCAAAAGCATTAAATATGATACTTCAGCCTGTACGTGATCATTTTAGCAAAGA
TCCCAAGGCAAAGGATCTGTTGAAACGAGTCAAGGGTTATAGGGTAACAAGGTGA
AA sequence
>Potri.010G248900.2 pacid=42798817 polypeptide=Potri.010G248900.2.p locus=Potri.010G248900 ID=Potri.010G248900.2.v4.1 annot-version=v4.1
MEENDQTPPSEEMQSLTVTPSASSSSNPTTPQLLSLEERFQLVRSVGEECIQEDELRNLLEKKPLPICYDGFEPSGRMHIAQGVMKTINVNKLTKAGCKM
KIWIADWFAQLNNKMGGDLKKIKTVGEYLIEIWKAVGMDIDGDKVEFLWSSDEINSRAHEYWPLVMDIARRNKLPRIMRCVQIMGRSEQDELTAAQIFYP
CMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEEVEVKTKIKKAYCPPQIVEGNPCLEYI
KHIVFPWFNKFKVERNPENGGEKIYESFEELVSDYESGGLHPGDLKPALAKALNMILQPVRDHFSKDPKAKDLLKRVKGYRVTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
0 1
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065600
[exp]
1.41 0.9086 Pt-LOS1.2
AT5G05920 DHS, EDA22 embryo sac development arrest ... Potri.003G186900
[exp]
1.73 0.8551
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Potri.006G153900
[exp]
2.00 0.8586 Pt-SYNC3.1
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Potri.002G198500
[exp]
2.82 0.8397
AT4G39280 phenylalanyl-tRNA synthetase, ... Potri.004G155000
[exp]
4.47 0.7412
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065700
[exp]
6.32 0.8370 LOS1.1
AT4G17520 Hyaluronan / mRNA binding fami... Potri.002G138300
[exp]
6.70 0.7859
AT4G16830 Hyaluronan / mRNA binding fami... Potri.014G049300
[exp]
9.94 0.7231
AT2G29690 ATHANSYNAB, ASA... anthranilate synthase 2 (.1) Potri.009G044300
[exp]
10.09 0.8045
AT3G04480 endoribonucleases (.1) Potri.019G019600
[exp]
11.22 0.7386

Potri.010G248900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.