Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55730 573 / 0 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 571 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 527 / 0 ATCAX6 cation exchanger 6 (.1) AT5G01490 354 / 8e-119 ATCAX4, CAX4 cation exchanger 4 (.1) AT3G51860 343 / 1e-114 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 331 / 1e-109 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469800 [exp] 574 / 0 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 560 / 0 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.016G115500 [exp] 349 / 4e-117 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 342 / 2e-114 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 326 / 5e-108 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 324 / 3e-107 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.001G375500 [exp] 45 / 0.0001 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034853 [exp] 682 / 0 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 678 / 0 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 546 / 0 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10027136 [exp] 545 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10009431 [exp] 422 / 1e-146 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10032889 [exp] 382 / 2e-130 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027791 [exp] 323 / 1e-106 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 317 / 2e-104 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 317 / 3e-104 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10035507 [exp] 303 / 8e-99 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.010G249200.6 pacid=42797021 polypeptide=Potri.010G249200.6.p locus=Potri.010G249200 ID=Potri.010G249200.6.v4.1 annot-version=v4.1 ATGATGATGCCCATGGAGGAGAAAGTAGAAGTTGAATCTGATGAGGAGATCCCTTTTAGTGCATCAGCAACAGGAAAGAAAGTGCACCCTTTTGATTCTG AGGGAAATAGTATTGCCTCACATGTTGATATGTCCAAGTCATGGATTTCAAAGAGAATACAAATGGGTCCTCTTAGAAGTATATACATTGTTCTAATTAA AGCCAAGATTAATATGCTGCTTCCTTTTGGTCCCTTAGCAATACTGCTTCACTATCTTACTGGAAAGCATGGATTGGTCTTCTTGCTCAGCATGCTGGGT ATCACGCCTTTGGCTGAGCGTTTGGGTTATGTAACCGAGCAGCTTGCTTTCTACACGGGACCAACAGTTGGTGGGCTTTTAAATGCAACATTCGGGAATG CAACAGAGATGATAATATCAATCTATGCATTGAAAAGTGGGATGATAAGGGTTGTTCAACAATCTTTGTTGGGCTCCATCTTGTCGAATATGCTCTTGGT TCTTGGATGTGCTTTCTTCTCTGGTGGGATTGCCAATCACCAGAAGGTTCAGGTTTTCAACAAGGCAGCTGCTCTGGTGAATTCTGGATTGTTATTGATG GCTGTGATGGGGATAATGTTTCCCGCTGTACTTCACTTCACACGCACAGAGGTTCATTTTGGCAAGTCAGAGTTGGCCCTTTCAAGATTTAGCAGCTGTA TAATGCTTATAGCTTATGGAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCCTAATCTCTACAGCCTTGTTGACGAGGGAGGAGTAAATGATCAAGAAGA TTCTGATGATGAAGAGGCACCTGAAATAACTCAATGGGAAACAATTGGCTGGCTTGCAATTTTGACTCTGTGGATTTCTATATTGTCAGGGTACCTTGTC GATGCCATACAGGGAGCATCTGACTCATTGAACATGCCTGTGGCTTTTATCAGTGTCATTCTGCTTCCAATTGTTGGAAATGCTGCTGAGCATGCAAGTG CAATCATGTTCGCCATGAAGGATAAGCTTGACATCACAATTGGAGTTGCAATTGGATCGTCTACACAGATTTCAATGTTTGTGATTCCCTTCTGCGTTGT TGTTGGATGGTGTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAAACTGCTACGCTCTTCATCTCTGTGCTAGTGGTGGCATTTATGTTGCAG GATGGAACTTCAAACTATTTCAAGGGTTTCATGCTTATTCTATGCTACCTCATAGTCGCAGCAAGTTTCTTTGTACATGTTGATAAAGACGAGAACTAG
AA sequence Show only first row Show all	>Potri.010G249200.6 pacid=42797021 polypeptide=Potri.010G249200.6.p locus=Potri.010G249200 ID=Potri.010G249200.6.v4.1 annot-version=v4.1 MMMPMEEKVEVESDEEIPFSASATGKKVHPFDSEGNSIASHVDMSKSWISKRIQMGPLRSIYIVLIKAKINMLLPFGPLAILLHYLTGKHGLVFLLSMLG ITPLAERLGYVTEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFSGGIANHQKVQVFNKAAALVNSGLLLM AVMGIMFPAVLHFTRTEVHFGKSELALSRFSSCIMLIAYGSYLFFQLKSQPNLYSLVDEGGVNDQEDSDDEEAPEITQWETIGWLAILTLWISILSGYLV DAIQGASDSLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGQPMDLNFQLFETATLFISVLVVAFMLQ DGTSNYFKGFMLILCYLIVAASFFVHVDKDEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	0	1
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	1.73	0.8671
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.008G068800 [exp]	2.44	0.8288
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	2.82	0.8456
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	2.82	0.8363
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	3.00	0.8434
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.002G032100 [exp]	7.54	0.7706	Pt-MPK1.2
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	9.00	0.8208
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G385750 [exp]	9.48	0.8183
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	10.58	0.8220
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.019G112000 [exp]	10.95	0.7910

Compare expression of checked genes

Potri.010G249200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.