Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55915 157 / 4e-45 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009700 [exp] 303 / 6e-103 AT1G55915 314 / 2e-105 zinc ion binding (.1) Potri.011G092900 [exp] 143 / 9e-40 AT1G55915 429 / 5e-149 zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016607 [exp] 142 / 2e-39 AT1G55915 431 / 4e-150 zinc ion binding (.1) Lus10037337 [exp] 125 / 1e-34 AT1G55915 214 / 5e-68 zinc ion binding (.1) Lus10035762 [exp] 109 / 8e-29 AT1G55915 155 / 2e-45 zinc ion binding (.1) Lus10035761 [exp] 103 / 1e-27 AT1G55915 134 / 4e-39 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF08325 [poplar] [flax] WLM WLM domain
Representative CDS sequence Show only first row Show all	>Potri.010G249400.2 pacid=42800124 polypeptide=Potri.010G249402.1.p locus=Potri.010G249400 ID=Potri.010G249400.2.v4.1 annot-version=v4.1 ATGACCTCAACAAAGTATGGGAAATCAAACCCGAAAAAGGTTGAAGAAGAAGATGCAAAGAAAGTTCTCGAAAAGGTAGCAAAACAAGTACAACCCATCA TGAAAAAACGCAAATGGAAAGTCAAAGTCCTGTCTGAATTCTGTCCTGTAAACCCAGCTCTTATGGGGTTGAATATAGGAGGAGGTGCAGAGGTCAATTT GAGATTGAGGAGGACAAATAACGAAGATTCCATTTCTGCTACCCTCGCATGGAGTTTGTTTATGCCCATTTACTTGCATTCCAAATCATGTTACCAATTA TTACAAGAATGTGAGGAACTGATGGCTAAAGGAATAACTGGAACCGGGCAAGGATTTGGTCTTCCCGGGAGACGGTTGGGTGGGTTCTCCCGTCAACCCC GCCCATCTGCTTTGGCTGCCGCAGAGAACAGAGCACGACGTGATACTCTCTTGCCATCAGGTCCTAAACGTCCCAATACAAGCTGCTGCGCCATGGCTGC TGAAAGGAGATTACACGATGACTTGTGGTGTGGTTCCAAGTCTTCAGATAGTGTCATTTCTATCGAAGGAAATGTTGGGCGTCCTGAAGGCTCAAGTACT TCCGTGAGTTCCGAAGGCATATCTGCCCAAACTTCACCCATGACATCCATGAGTGGTCAGGAATCGATAGGTGACCATCCAACATGGCAGTGTAATACCT GTACTCTATTGAATCAGCCAATGGCACTGATATGTGAAGCCTGTGGGACCCAAAGACATAAAGATGTTGCCAAGTTCAAGGTTTGGTTTGGCAAGAAAAA CTTCTGTATTCTAAGGGATCATGTTGGTTGGTACTCAATTTTATAG
AA sequence Show only first row Show all	>Potri.010G249400.2 pacid=42800124 polypeptide=Potri.010G249402.1.p locus=Potri.010G249400 ID=Potri.010G249400.2.v4.1 annot-version=v4.1 MTSTKYGKSNPKKVEEEDAKKVLEKVAKQVQPIMKKRKWKVKVLSEFCPVNPALMGLNIGGGAEVNLRLRRTNNEDSISATLAWSLFMPIYLHSKSCYQL LQECEELMAKGITGTGQGFGLPGRRLGGFSRQPRPSALAAAENRARRDTLLPSGPKRPNTSCCAMAAERRLHDDLWCGSKSSDSVISIEGNVGRPEGSST SVSSEGISAQTSPMTSMSGQESIGDHPTWQCNTCTLLNQPMALICEACGTQRHKDVAKFKVWFGKKNFCILRDHVGWYSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55915			zinc ion binding (.1)		Potri.010G249400 [exp]	0	1
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.017G091000 [exp]	22.09	0.5903
AT1G11480			eukaryotic translation initiat...		Potri.011G031900 [exp]	35.91	0.5638
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	40.24	0.5467
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	50.95	0.5795
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Potri.005G036700 [exp]	90.55	0.5416
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	99.13	0.5435
					Potri.004G200600 [exp]	140.35	0.5253
AT4G28290			unknown protein		Potri.019G111501 [exp]	140.94	0.4933
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	194.92	0.4906

Compare expression of checked genes

Potri.010G249400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.