Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12100 774 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 305 / 3e-93 RPF2 rna processing factor 2 (.1) AT5G39710 305 / 5e-92 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 313 / 8e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 296 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 303 / 1e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 293 / 2e-88 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 289 / 8e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 288 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 294 / 4e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 350 / 6e-106 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 328 / 4e-99 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 317 / 4e-96 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 308 / 2e-93 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 309 / 2e-92 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G368700 [exp] 306 / 3e-89 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 301 / 2e-88 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 297 / 4e-88 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 291 / 1e-86 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023863 [exp] 905 / 0 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008650 [exp] 855 / 0 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035577 [exp] 473 / 6e-161 AT5G12100 363 / 8e-119 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014365 [exp] 339 / 1e-107 AT5G12100 268 / 4e-81 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 324 / 3e-98 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 297 / 4e-88 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 294 / 4e-88 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 297 / 2e-87 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 295 / 2e-86 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 294 / 2e-86 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G249800.7 pacid=42799808 polypeptide=Potri.010G249800.7.p locus=Potri.010G249800 ID=Potri.010G249800.7.v4.1 annot-version=v4.1 ATGGCAAGGCGCCTTTCCAAGTTACAGTACCGTCCTCTTACTTCCTCGAGCAAGCTTTCGTTTATCCCCTTCTCTACCACTGTCTCTGCCGAAAACCCGC AAAACTCCACCACCGCCGATGGCCAAGACCACCTCTTTAACGACCAAATCCACAACCTCCGTGTCCTCCTTCAACAAGGCCGCAACGACACTGCTTATAA CTTCACCAAATCTCTCATTCTCTCTAACCCATCTTCATTTTCCTCACCTTCTCACCTTCTCTCGTTTTTCACTTCTTCTTCTGATGATGCTTCTTTAAAT CTTACTCTCTCCGAAATGTTGCTCTCTGTTTGTTCCGAGTCCAAGATGCACAGTCAAGTTTCAGAATTGTACGATTTCATGAGGCAAGAGGGGCGGCTTC CTTCGTTTGGTTATGTGAGGATGATTGTTGAATCTTTGGTGGAATCCAAGAAATTTGATAACGTTCTTGATTTGTTTAAGGAGATGGTGGGCTTGGGTTT TAGACCTGATAAGCTTGTTTATGGGAGAGCAATGCTAGCCGCGGTGAAATTGGGGGATTTGAAACTTGCTATGGAGTTGTTTGAGACTATGAAAAGGAGG AAAGTTGTTCCTAATGTGTTTGTTTACAATGTTTTGATTGGTGGGTTGTGTAAGGAGAAGAGGATAAGGGATGCGGAGAAGCTGTTTGGTGAAATGTCTG TGAGGAATTTGGTGCCAAATAGGGTGACTTTTAATACGCTTATTGATGGATATTGTAAGGCAGGGGAGGTGGATGTGGCGATTGGCTTGAGAGAAAGGAT GAAAAAGGAGAAGGTGGAGCCGAGTATTATTACTTTTAACTCGTTGCTCAGTGGCCTTTGTAAGGCACGGAGAATCGAGGAGGCGAGGTGTATGTTGAAC GAGATAAAATGCAATGGTTTTGTGCCTGATGGGTTTACTTACAGCATAATTTTTGATGGACTATTGAAGTCGGATGACGGGGCAGGAGCTGCTTTGGATT TGTATCGGGAGGCAATTGGGAAGGGAGTCAAGATTGATAATTACACTTGTAGTATTCTGTTGAATGGATTGTGTAAAGAAGGGAAAGTTGAAAAGGCAGA GGAGGTGTTGAAGTCCCTCGTGGAACACGGGCTCGTTCCAGGTGAGGTGATATATAACACTATTGTGAATGGTTATTGCCAAATAGGCGACATGGATAGA GCCATTTTGACTATTGAGCAAATGGAAAGTCGTGGGTTGAGACCAAATTGTATTGCATTTAATTCTGTGATTGATAAGTTTTGTGAAATGCAGATGATAG ATAAGGCGGAGGAATGGGTGAAGAAGATGGTGGGGAAGGGAATAGCCCCAAGCGTGGAGACATATAATATCCTTATTGATGGCTATGGAAGGCTGTGTGT TTTTTCTAGGTGTTTCCAGATTCTTGAAGAAATGGAGGAAAATGGGGAAAAGCCGAATGTTATAAGCTACGGCTCTCTCATAAATTGTTTATGCAAGGAT GGGAAAATTCTTGAGGCAGAAATGGTCCTCAGGGATATGGTAGGCAGAGGGGTCTTGCCTAATGCAAATATATATAATATGCTTATTGATGGTAGTTGTA CAGTGGGGAAGTTGAGAGAGGCTTTGAGATTCTTTGATGAGATGTCGAAAAATGGGATAGGCGCAACGATTGTAACATACAATTCCCTCATTAAAGGGCT ATGCAAAATGGGAAAGTTAAAGGAAGCTGAAGAGATGTTTTTCCTAATTACTAGTACGGGTCACTGTCCTGATGTGATCACATACAACTCCTTAATCTCA GGGTACTCAAATGCTGGAAACTCGCAGAAATGTCTTGAGCTATATGAAACTATGAAGAAGTTAGGCTTAAAACCTACTATAAATACATTTCATCCCCTAA TCAGCGGGTGCAGCAAGGAAGGGATAAAGCTCAAAGAGACACTGTTTAATGAAATGTTGCAGATGAATTTGTCCCCAGATCGAGTTGTGTACAATGCTAT GATTCACTGTTATCAAGAGACTGGGCATGTTCAAAAGGCATTTTCTTTGCAAAAAGAGATGGTAGACATGGGAGTTCGTCCTGATAACAAGACCTATAAT AGTTTGATTCTGGGCCACTTAAAAGAGGGGAAGTTGTCGGAAACAAAGGATCTTGTTGATGACATGAAGGCTAAAGGATTAATCCCTGAAGCTGATACCT ATAGCTTGCTGATACAGGGACATTGTGACCTGAAGGATTTTAATGGAGCATATGTTTGGTATAGAGAAATGCTTGAGAACGGTTTCCTTCCTAATGTCTG CATCTGCAATGAGCTATCCACTGGCCTTAGAAAGGACGGGAGGTTGCAAGAGGCCCAGAGCATCTGCTCTGAAATGATTGCTAATGGAATGGATAATTTG GACACTAATGAGGACCTCTCTGATGTTGCCAAAATGCAACACAACAGCACCGATGCTCATTAA
AA sequence Show only first row Show all	>Potri.010G249800.7 pacid=42799808 polypeptide=Potri.010G249800.7.p locus=Potri.010G249800 ID=Potri.010G249800.7.v4.1 annot-version=v4.1 MARRLSKLQYRPLTSSSKLSFIPFSTTVSAENPQNSTTADGQDHLFNDQIHNLRVLLQQGRNDTAYNFTKSLILSNPSSFSSPSHLLSFFTSSSDDASLN LTLSEMLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRR KVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLN EIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDR AILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKD GKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLIS GYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYN SLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMDNL DTNEDLSDVAKMQHNSTDAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	0	1
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	7.87	0.7217
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	9.38	0.6518
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	10.95	0.7316
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.001G372600 [exp]	11.61	0.6624
AT1G07175			unknown protein		Potri.001G277600 [exp]	12.24	0.6894
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	22.20	0.6541
					Potri.004G100301 [exp]	22.44	0.6908
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	22.49	0.6669
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	23.43	0.6954
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	23.47	0.6459

Compare expression of checked genes

Potri.010G249800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.