Plant FIBer expression Database

Potri.010G250100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73090 328 / 7e-113 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037331
[exp]
356 / 5e-123 AT1G73090 370 / 1e-128 unknown protein
Lus10035752
[exp]
353 / 2e-122 AT1G73090 374 / 2e-130 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G250100.1 pacid=42799502 polypeptide=Potri.010G250100.1.p locus=Potri.010G250100 ID=Potri.010G250100.1.v4.1 annot-version=v4.1
ATGAAGGCAACAGCTTTACACAATCTCCTCTCCTCACCACCTCCAAAAATCAACCATCTCCTCCTCCCTCACCAACACCAACTGCCACATGCTAGCTTCA
CAATCTCCAAGGGTCCACTGTTCTCCTTCTTTTCTTCTAGTGGTGCAATCAGAGCCGTTGAGAGAAGACGCTTGTCATCCATCTGGGATGAGAAGCCATA
TGAGTTACTAGAAGAAGATGTTGTCACATTTCTTGACCCACCTAAGGAGCTTATCCCTCTTGACCCTGACACTTACAATCCAGCTGCTTACCTCTGGAGT
AAAATTGAAGATATACCAGAAGAAAGGCGTCTTAGATTGCTGTCTCTGATAAAACAACCTAGGCTAATGTCAAGAGCTTGGGAGATAGCTGGCATGAGAT
ATGAGGATGCTAAGTTAGCAAAGAAATGTGGGTCTGACTTGCTGTGTTGTGAAGATGGTGAATTGTCATTTGAGTTTTATAGTTGTAGAAGTAATGGAGG
TGGTTTGGATGTTTCTTGGATGAAATCGTTCAAGATGGTTATTTTCCGTTGCGATAATGGGGAGGTTTATGGGAGATTTATTGGTGGATCAGTGCTGGCT
CAAATCACAAAAACCTTTAGTCCATTGTATTTTAAGGTCGTGGAGCAGAAGGAAGTAATGTCTACAGAGCAGCCCTGTGATTTAGCATATGAATTTGGAG
ATGGGCACTTGGATCTCTGTAATTATCCACGACACTTTCCAATACCAGAAAAACACCCGTACCCTTTCGATGATCAGGTTGTCATATATATTCGTCACGT
TGGACCTGGGGTGCTAGTGGGGCAAGCATGGCAAGAAGGGAAGGAATTACAGCAAGTTCCTCAGAAGTTATGTGATGAGATTTTGATGGTTAAAGATTAT
GCACCACCCAGAGAATATCCATAA
AA sequence
>Potri.010G250100.1 pacid=42799502 polypeptide=Potri.010G250100.1.p locus=Potri.010G250100 ID=Potri.010G250100.1.v4.1 annot-version=v4.1
MKATALHNLLSSPPPKINHLLLPHQHQLPHASFTISKGPLFSFFSSSGAIRAVERRRLSSIWDEKPYELLEEDVVTFLDPPKELIPLDPDTYNPAAYLWS
KIEDIPEERRLRLLSLIKQPRLMSRAWEIAGMRYEDAKLAKKCGSDLLCCEDGELSFEFYSCRSNGGGLDVSWMKSFKMVIFRCDNGEVYGRFIGGSVLA
QITKTFSPLYFKVVEQKEVMSTEQPCDLAYEFGDGHLDLCNYPRHFPIPEKHPYPFDDQVVIYIRHVGPGVLVGQAWQEGKELQQVPQKLCDEILMVKDY
APPREYP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73090 unknown protein Potri.010G250100
[exp]
0 1
AT5G59600 Tetratricopeptide repeat (TPR)... Potri.001G243800
[exp]
2.82 0.9239
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.001G369900
[exp]
4.69 0.9332
AT4G37170 Pentatricopeptide repeat (PPR)... Potri.017G091600
[exp]
4.89 0.9059
AT4G10650 P-loop containing nucleoside t... Potri.012G083100
[exp]
5.09 0.8940
AT2G01860 EMB975 EMBRYO DEFECTIVE 975, Tetratri... Potri.005G252300
[exp]
5.29 0.9388
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G032600
[exp]
5.91 0.8879
AT1G43760 DNAse I-like superfamily prote... Potri.002G000402
[exp]
6.78 0.8955
AT5G17660 tRNA (guanine-N-7) methyltrans... Potri.013G070800
[exp]
11.09 0.9262
AT5G66860 Ribosomal protein L25/Gln-tRNA... Potri.005G135000
[exp]
15.23 0.8912
AT3G04260 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid... Potri.019G025100
[exp]
15.32 0.9223

Potri.010G250100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.