Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21200 419 / 4e-148 PGR7 proton gradient regulation 7 (.1) AT3G03890 65 / 8e-12 FMN binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G008801 [exp] 219 / 2e-71 AT3G21200 145 / 3e-43 proton gradient regulation 7 (.1) Potri.013G057700 [exp] 62 / 7e-11 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.019G035200 [exp] 61 / 3e-10 AT3G03890 452 / 4e-161 FMN binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037330 [exp] 407 / 1e-143 AT3G21200 368 / 6e-128 proton gradient regulation 7 (.1) Lus10035751 [exp] 403 / 8e-142 AT3G21200 362 / 6e-126 proton gradient regulation 7 (.1) Lus10010649 [exp] 61 / 2e-10 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10013617 [exp] 51 / 8e-07 AT3G03890 363 / 6e-122 FMN binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10615 [poplar] [flax] DUF2470 Protein of unknown function (DUF2470)
Representative CDS sequence Show only first row Show all	>Potri.010G250200.1 pacid=42799252 polypeptide=Potri.010G250200.1.p locus=Potri.010G250200 ID=Potri.010G250200.1.v4.1 annot-version=v4.1 ATGCATCTCCAAACCCAATCTCTCACCACTAACTTACCTCTCCCTTCTCTCTTTCTCCCAAAACCAACAACAACAAAGCCCCACCAATTCACACCTCTAA AGCAGCAAAAACCATTCCCCCAATTCTCCTTAAAATGCTCTCTTTCAACTGTATCAGCGGAGCCACCTACTCATGTTGTTGGATCCTCAAATGATAAGCC CTTTCCTGCTGAAATTTCAAGAACCATCATGGAGTTATCTTCAGTTGGCACTCTTTCTACTTTGACCCCAGATGGCTGGCCTTTGAGTGTTGGTGTTAGG TTTGCTGTTGATGATGATGGCACTCCTATTTTGTGCTTGAGTGATTCTCATAGACAGTTTTCTGTTGATAGAAGGTCTAGTCTTCATGTTCAGTTAGAGC AATCTGGAATGAGGACACCTCAGTGCACAATTCAAGGAAGCCTTGACAAGCCTGAGGACACAAAGCTTTTGAAGCGGGCTCATTCAATGTGGAAAAAGAG ATTTGGAGAAGAAGTTAAGGATGAACTTATTTATGTTGTGGCCATGGAGCGGGTACTTCAAATGGAAGACTTCATGGAGGATGGTGTATGGGTCTCATCT TCTGATTATAAAAATGCTAGCCCTGATCCACTCCGAGACTTTGCAGAAGCATTTGCCAATGAGATCAATGACAAGAACATGGAAGATGTTAGCCGCTTTT GCAATGTATATGTTGATTTGGACTTCCAGGTGTCAGAAGCGAAGATGATATGGGTTGATAGGCTAGGCTTTGACATGCGTCTTTGGTCTCCTCAGAAAGG CACGTTTGATGTCCGAATTCCTTTCCCAAGAGAAGTGACTGATGTGAAGGGTGCCAAGTCCTCATTCAATGGTATGTCACAGCTTGCTTGGGAGGTGGAA AAAAACTACCAGACGCTGAACTTTAAGAAGGTGCAGCAATTAAAGCAGATAACACACAAGGGATTGTAA
AA sequence Show only first row Show all	>Potri.010G250200.1 pacid=42799252 polypeptide=Potri.010G250200.1.p locus=Potri.010G250200 ID=Potri.010G250200.1.v4.1 annot-version=v4.1 MHLQTQSLTTNLPLPSLFLPKPTTTKPHQFTPLKQQKPFPQFSLKCSLSTVSAEPPTHVVGSSNDKPFPAEISRTIMELSSVGTLSTLTPDGWPLSVGVR FAVDDDGTPILCLSDSHRQFSVDRRSSLHVQLEQSGMRTPQCTIQGSLDKPEDTKLLKRAHSMWKKRFGEEVKDELIYVVAMERVLQMEDFMEDGVWVSS SDYKNASPDPLRDFAEAFANEINDKNMEDVSRFCNVYVDLDFQVSEAKMIWVDRLGFDMRLWSPQKGTFDVRIPFPREVTDVKGAKSSFNGMSQLAWEVE KNYQTLNFKKVQQLKQITHKGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21200		PGR7	proton gradient regulation 7 (...		Potri.010G250200 [exp]	0	1
AT1G64510			Translation elongation factor...		Potri.001G088300 [exp]	9.38	0.9630
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	14.17	0.9565
AT5G19370			rhodanese-like domain-containi...		Potri.009G069300 [exp]	14.42	0.9259
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	15.62	0.9574
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	17.43	0.9564
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.004G152900 [exp]	19.44	0.9559	Pt-CLPP6.2
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.004G087100 [exp]	20.39	0.9513
AT4G34412			unknown protein		Potri.004G141400 [exp]	23.74	0.9144
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	25.39	0.9564
AT3G25480			Rhodanese/Cell cycle control p...		Potri.002G239800 [exp]	25.41	0.9495

Compare expression of checked genes

Potri.010G250200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.