Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 70 / 2e-13 unknown protein AT5G44860 67 / 2e-12 unknown protein AT4G19950 65 / 9e-12 unknown protein AT2G18690 54 / 5e-08 unknown protein AT2G18680 51 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125800 [exp] 56 / 6e-09 AT5G44860 396 / 4e-139 unknown protein Potri.015G125600 [exp] 56 / 1e-08 AT1G31130 327 / 7e-112 unknown protein Potri.005G186200 [exp] 55 / 2e-08 AT4G19950 185 / 3e-56 unknown protein Potri.002G074200 [exp] 52 / 1e-07 AT1G31130 128 / 3e-34 unknown protein Potri.007G105600 [exp] 49 / 3e-06 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 48 / 4e-06 AT4G19950 182 / 4e-55 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018322 [exp] 64 / 2e-11 AT4G19950 417 / 3e-147 unknown protein Lus10023204 [exp] 57 / 7e-09 AT2G18680 75 / 4e-15 unknown protein Lus10018940 [exp] 55 / 2e-08 AT1G31130 231 / 8e-74 unknown protein Lus10017130 [exp] 54 / 5e-08 AT4G19950 410 / 1e-144 unknown protein Lus10028643 [exp] 52 / 3e-07 AT1G31130 228 / 1e-72 unknown protein Lus10015508 [exp] 49 / 1e-06 AT2G18680 64 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G250300.1 pacid=42799508 polypeptide=Potri.010G250300.1.p locus=Potri.010G250300 ID=Potri.010G250300.1.v4.1 annot-version=v4.1 ATGGTTGCAACTCCATTGAATGTGATTGGAATCTTGAGGGAAGCCATTACAATATTAGCAAGAAATGGGAAGTTCATGCTCCAAGTCATGCTTACCATAC TCTTTCCTTTCTCTCTTATTGGCCTGCTTCACTATCTTTTAGCAGGCTTTTTAATTGAAAGGGTTGAGGATAGCTATGAGAAGAATTCTCCTCTTGGTCA AAAAGATGTAAGAACTCTTATAGGGCTTGAACTTGCTTTTTTTGCTGCCTTTTTCTTTGTATGCTTCTTCGGAATTATGCTAACGATTCATGCATCAGCT TCTAGCTATCTTGGTAAAAATATGGGGCTGAATGATCTGATTTCGTCTATCCATTATGCCTGGAAGAAACCATTGATCACTTGGCTATGTGTTTCTCTTT TTACTTTGACTTATGCTGTTTTAGCCATAGTCTTGATCAAATTGGTCAGCCTGCTTGATCCTAACAGTTATGCTATTTATCTGTGGGGTTGGTTTTTGAC AATTCTGGCTGCCCTTTTTTACCTTTATCTTGATGCAAGTTGGACTCTTGCACTTGTGATCTCAGTTTTGGAAAATGATTCTTGCGGAACAAAGGGACTG AAAAGATCAGAAAAACTTATCAGAGGAAGAAAAATTCAAGGGTTTCTCCTTATGTTCATTTTAACTGCACTTGTTGTCCCAATCTATGTTCTGCTCTATG TTACAGCAACTGATGATGATGATGATGATGAGCTTGGTCCCTTCGCTCAGTTTGCCTTTAGGTTTGTAGCAACAGTTCTCTTCTGCCTATCCAAGTTCTT TGTCTCTGTGGTTTTTACTGTGTTCTACTATGAATGTAAGCAGAGTGAGGGAGAGAGAGTAGTTATGGAGTTGGGAGTTGGGTACAGTTTAGCTCCTCAT AAACTTCAAGTTGAATTCTAG
AA sequence Show only first row Show all	>Potri.010G250300.1 pacid=42799508 polypeptide=Potri.010G250300.1.p locus=Potri.010G250300 ID=Potri.010G250300.1.v4.1 annot-version=v4.1 MVATPLNVIGILREAITILARNGKFMLQVMLTILFPFSLIGLLHYLLAGFLIERVEDSYEKNSPLGQKDVRTLIGLELAFFAAFFFVCFFGIMLTIHASA SSYLGKNMGLNDLISSIHYAWKKPLITWLCVSLFTLTYAVLAIVLIKLVSLLDPNSYAIYLWGWFLTILAALFYLYLDASWTLALVISVLENDSCGTKGL KRSEKLIRGRKIQGFLLMFILTALVVPIYVLLYVTATDDDDDDELGPFAQFAFRFVATVLFCLSKFFVSVVFTVFYYECKQSEGERVVMELGVGYSLAPH KLQVEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31130			unknown protein		Potri.010G250300 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	4.12	0.8708
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G237000 [exp]	10.48	0.8374
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.011G112100 [exp]	11.74	0.8374	2
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040215 [exp]	15.36	0.7404
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	16.52	0.8318
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	18.54	0.8271
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	18.97	0.8124
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	23.08	0.8058
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	23.91	0.7449
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	23.91	0.8143

Compare expression of checked genes

Potri.010G250300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.