Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 731 / 0 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 547 / 0 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G52340 223 / 7e-64 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 222 / 1e-63 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52350 154 / 8e-40 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 143 / 8e-36 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT2G28640 140 / 5e-35 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT5G50380 134 / 8e-33 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G13990 130 / 2e-31 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT1G54090 129 / 4e-31 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G008700 [exp] 1129 / 0 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 775 / 0 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 757 / 0 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G017800 [exp] 216 / 3e-61 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 213 / 3e-60 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 204 / 9e-57 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.014G015500 [exp] 204 / 2e-56 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 199 / 4e-55 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.015G094800 [exp] 144 / 7e-36 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037329 [exp] 767 / 0 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 761 / 0 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 750 / 0 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10035750 [exp] 251 / 2e-78 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10021283 [exp] 217 / 2e-61 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 210 / 7e-59 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10007751 [exp] 207 / 2e-57 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 198 / 2e-54 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 196 / 1e-53 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10018672 [exp] 195 / 3e-53 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.010G250500.1 pacid=42798704 polypeptide=Potri.010G250500.1.p locus=Potri.010G250500 ID=Potri.010G250500.1.v4.1 annot-version=v4.1 ATGTCTCAAGTGGATGGCATTGACAATCTTGTAGCTTCCAGGATAGTCTTGAAGACCAGTATAGAGAATTCAAGAGCTCTTGCCTCTGCTTTTGACAGTA CAGGCCAAAGATTGGAGGGGATGAAACAAAGATTACCATCTCTGGAAGCCGCTGTTAGACATGTCCCCAGGCAAAAGTGCACATTTGTTGCAATTAGAGA GCATATTGATCGTGCCATTGGCCCTGCCGCAGCGGTGCTAAAGGTGTATGATATCATTCAAGAGCTCCAGAAGTCACTATTGTCTCACCCGTGTTCTGAT CTTTCAACTTACCTGCTAATGGTGAAACAGCTTGAGGAATCATTGAAATTTCTGGCTGACAACTGCAGGCTAGCAATTCAGTGGCTGGAGGCTATTCTTG AGTTTCTGGAAGATAATGCAGTTCATGATGATCTTTACATCTTGAACGTCAACAAGTCATTGAGCATCCTGCAAGAGTTGCAAGCCACTGACAAACATGC TCGGCTCGGTGGGGGAATTCTCTGTGCTGCATTGGACAAACTTGAAATTGAATTCAAGCAGATTCTTGTGGAGAACCGCATTTGTGTTGTTTTGGATTCT TTCTCATCTTCTATTAGAAATCAAGCCTCCATTGCTCCATCTCCTCTGCCAGTGGCTGTTATACAGAAGCTTCAGGCTATTGTTGAGAGGCTAGATGCAG ATAATAGGCTTGAGAAATGCATTTCGACTTATGTTGAAGTTCGGTGTCTGAATACCATGAGAAGTTTTCAAGCTCTTGACTTGGATTACCTCAACCAGTC ATTCAACGAATTTGATGATGTGCAAGATGTTGAGTGTTACGTTGATCAATGGTGCAAGCATTTGCAGTTGGCTGTAAAGCAAGTTTTTGAAACTGAATAT AAGCTTTGCAGTGATGTGTTTGAGAAGAATGGACCAGAAGTTTGGATGGATTGCTTCGCAAAAATCGTTACACAATCTGGAATTCTTTCTTTCCTCCGCT TTGGAAAGAAGATTACAGGGTGTAAGAATGATCCAGTCAAGCTCATGAAGCTACTGGACATTTTTTCGACGTTGGACAATCTGAGAGTGGATTTCAACAG ACTTTTTGGAGGGTCAGCATGCATTGAAATCCAGACTATGACTAGGGATCTCCTCAAGGGAGTTGTTAATGGAGCTTGTGAGATTTTCTGGGAACTTCCG ATCCAAGTGGAGCTGCAAAGGCGAAGCTCACCTCCTTTAGATGGCAGTGTTCCAAGGCTAGTAAGCTTTGTAACCGATTACTGTAATCATCTACTAGGGG ATGATTATAGGCCACTATTGACTCAGATTCTGACAATTCAACAGAGTTGGAAACAAGAGAAGTACCAAGAGGAACTCGTTACCAACCAGATTTATTACAT AATAAAGCAGATTGGTCTAAACTTGGATGCATGGTCAAAAGCCCACTATGATCTCACACTGTCCTACCTTTTCATGATGAATAACCATTGTCATTTTTGC TGCTTGAAAGGGACAAATCTTGGAGGTTTGATGGGAGATTCTTGGTTGAAAGCTCATGAACAGTATAGGGACTATTACATGACTCTTTACCTGAGAGAAA GCTGGGGAAAAATATTTGCTTCTCTTAGCCAAGAGAGGGGATTTGCGGGGGATTTGGTCAAGAAGAGACTGAAGTCATTCAATGAGGAGTTTGATCACAT GTACCAGAAGCAATCCAATTGGGTTGTTCCCTGCGAAGACTTAAGGCTGAAGATGTGTAAACTTGTTGTCCAGGCTTATGTACCTGTTTACAGGAGCTAC TTGCAGGACTATGGATTCCAGGCTGAAACTGATGCTAGTCCCAGCAGACATGTGAAATACACTACGCAAGGTTTGGAAGCCATGCTCAGCTCTCTCTTTC AGCCAAAGCTAAGCAAGTCTGGCAGCACCAAACACAACCGTTTGATTGGTAAAATAAAAGACATCGTGACAGATAACTTTCGCTTGACACTAATGGCTGT ATAA
AA sequence Show only first row Show all	>Potri.010G250500.1 pacid=42798704 polypeptide=Potri.010G250500.1.p locus=Potri.010G250500 ID=Potri.010G250500.1.v4.1 annot-version=v4.1 MSQVDGIDNLVASRIVLKTSIENSRALASAFDSTGQRLEGMKQRLPSLEAAVRHVPRQKCTFVAIREHIDRAIGPAAAVLKVYDIIQELQKSLLSHPCSD LSTYLLMVKQLEESLKFLADNCRLAIQWLEAILEFLEDNAVHDDLYILNVNKSLSILQELQATDKHARLGGGILCAALDKLEIEFKQILVENRICVVLDS FSSSIRNQASIAPSPLPVAVIQKLQAIVERLDADNRLEKCISTYVEVRCLNTMRSFQALDLDYLNQSFNEFDDVQDVECYVDQWCKHLQLAVKQVFETEY KLCSDVFEKNGPEVWMDCFAKIVTQSGILSFLRFGKKITGCKNDPVKLMKLLDIFSTLDNLRVDFNRLFGGSACIEIQTMTRDLLKGVVNGACEIFWELP IQVELQRRSSPPLDGSVPRLVSFVTDYCNHLLGDDYRPLLTQILTIQQSWKQEKYQEELVTNQIYYIIKQIGLNLDAWSKAHYDLTLSYLFMMNNHCHFC CLKGTNLGGLMGDSWLKAHEQYRDYYMTLYLRESWGKIFASLSQERGFAGDLVKKRLKSFNEEFDHMYQKQSNWVVPCEDLRLKMCKLVVQAYVPVYRSY LQDYGFQAETDASPSRHVKYTTQGLEAMLSSLFQPKLSKSGSTKHNRLIGKIKDIVTDNFRLTLMAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	0	1
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	2.00	0.9324
					Potri.002G068501 [exp]	7.93	0.8734
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	8.36	0.8871
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	8.36	0.8953	CYP86.5
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G009000 [exp]	10.00	0.8574
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	11.48	0.8412
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	14.79	0.8938
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	17.43	0.8785	8
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	17.54	0.8648
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	17.66	0.7969

Compare expression of checked genes

Potri.010G250500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.