Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL7.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G01250 399 / 2e-142 Ribosomal protein L30/L7 family protein (.1.2) AT2G44120 397 / 5e-142 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 182 / 3e-57 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G008000 [exp] 437 / 8e-158 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.006G073200 [exp] 424 / 9e-153 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.018G140300 [exp] 405 / 3e-145 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 231 / 4e-76 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 217 / 6e-71 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021296 [exp] 392 / 8e-140 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 392 / 8e-140 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10004220 [exp] 389 / 2e-138 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10029423 [exp] 386 / 2e-137 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10040040 [exp] 219 / 2e-71 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10019603 [exp] 218 / 3e-71 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 70 / 2e-13 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [poplar] [flax] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [poplar] [flax] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G250900.5 pacid=42799349 polypeptide=Potri.010G250900.5.p locus=Potri.010G250900 ID=Potri.010G250900.5.v4.1 annot-version=v4.1 ATGGGCGAAGAGGCAACTAAGGTAGCGGTTCCAGAGTCTGTCTTGAAGAAGCAGAAGAGAGAGGAGGAGTGGGCATTGGCTAAGAAGCAGGAGCTTGCTG CTACTAAGAAAAAGAATACTGAGAACAGAAAGCTCATTTTCAACCGAGCTAAGCTATATGCAAAGGAGTACCAGGAGCAGGAAAAGCAACTTGTACAATG GAAGCGTGAGGCAAGGTTGAAGGGTGGATTTTATGTTGACCCTGAGGCTAAGCTCTTGTTTATTATTCGCATCCGGGGTATCAATGCCATGCACCCCAAG ACCAGGAGTATCTTGCAGCTTTTGCGTTTGAGACAGATCTTCAATGGTGTCTTCCTCAAAGTAAACAAGGCAACCGTGAATATGCTTCACAGGGTTGAAC CTTATGTGACCTTTGGGTATCCCAACTTGAAGAGCGTGAGGGAATTGATCTACAAGAGAGGCTTTGGGAAGTTGAACCAGCAGAGAATTCCTTTGACTGA CAACTCGATCATTGAGCAGGGTCTAGGCAAGCACGGCATTATCTGCGTGGAAGATCTCATTCATGAGATAATGACTGTTGGACCACATTTTAAGGAGGCA AATAACTTCTTGTGGCCATTCCAGCTCAAGGCTCCATTGGGTGGTCTGAAAAAGAAGAGGAATCACTATGTTGAAGGAGGAGATGCTGGAAACCGTGAGA ACTACATTAATGAGCTTATCAGGAGAATGAATTAG
AA sequence Show only first row Show all	>Potri.010G250900.5 pacid=42799349 polypeptide=Potri.010G250900.5.p locus=Potri.010G250900 ID=Potri.010G250900.5.v4.1 annot-version=v4.1 MGEEATKVAVPESVLKKQKREEEWALAKKQELAATKKKNTENRKLIFNRAKLYAKEYQEQEKQLVQWKREARLKGGFYVDPEAKLLFIIRIRGINAMHPK TRSILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGFGKLNQQRIPLTDNSIIEQGLGKHGIICVEDLIHEIMTVGPHFKEA NNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.010G250900 [exp]	0	1	Pt-RPL7.4
AT2G19730			Ribosomal L28e protein family ...		Potri.003G045500 [exp]	2.64	0.9683
AT5G04800			Ribosomal S17 family protein (...		Potri.008G017300 [exp]	2.82	0.9617
AT2G19740			Ribosomal protein L31e family ...		Potri.018G070100 [exp]	4.89	0.9454
AT4G25740			RNA binding Plectin/S10 domain...		Potri.017G146700 [exp]	6.00	0.9522	RPS10.3
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.014G057300 [exp]	6.00	0.9475	Pt-RPL15.5
AT2G19730			Ribosomal L28e protein family ...		Potri.001G194000 [exp]	6.00	0.9530
AT4G10450			Ribosomal protein L6 family (....		Potri.011G147700 [exp]	10.00	0.9479	Pt-RPL9.4
AT1G07070			Ribosomal protein L35Ae family...		Potri.010G199400 [exp]	10.00	0.9305
AT5G24510			60S acidic ribosomal protein f...		Potri.002G179400 [exp]	10.39	0.9240
AT4G14320			Zinc-binding ribosomal protein...		Potri.007G071800 [exp]	10.90	0.9472

Compare expression of checked genes

Potri.010G250900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.