Plant FIBer expression Database

Potri.010G251300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51610 614 / 0 Cation efflux family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034818
[exp]
630 / 0 AT1G51610 627 / 0.0 Cation efflux family protein (.1)
Lus10033367
[exp]
568 / 0 AT1G51610 571 / 0.0 Cation efflux family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01545 Cation_efflux Cation efflux family
Representative CDS sequence
>Potri.010G251300.1 pacid=42798463 polypeptide=Potri.010G251300.1.p locus=Potri.010G251300 ID=Potri.010G251300.1.v4.1 annot-version=v4.1
ATGCAAACATCATATCGTTTCTTGTCTCGCCTTTATCACTCACAAAAACGCAATCCCTCCATTTTATGCAACAGGGACTTGTTGTTTTTATTGACCCATG
ATAGTAATGGCAATACCACAGTTTTAGAACCCAATTTCACCGCTCAAAATCAAAGCTTTGCCTATAGTTCTTATACCCAGTCTTGTGGGTTTTTTGCCTC
TAAGAGCTCAAAAAGGTTTGCTTTTTGGGGGTTGGTTTCTTTGTATGGTAACCAGAATGATCAGAATTCAAGTTATAGCTACTTAGCTCATCGTGGTTTT
TTCACGAGAGCTAAACCAGTAAAGAGGATAGAAATAAGTGATCAACATAGTCAACGAGCAGTCACGACAGCATTATGGTGCAATTTTCTTGTCTTTTCTC
TCAAGTTTGGGGTTTGGTTTTCAACCAACAGTCATGTTATGTTGGCTGAAGTTGTGCATTCAATAGCAGATTTTGCAAACCAGGCGCTTCTCGCTTATGG
TCTGAGTAGCTCTAGGCGTGCACCTGATGCTCTTCATCCTTATGGTTACTCCAAGGAAAGATTTGTTTGGTCCCTCATATCAGCCGTTGGTATTTTTTGC
CTTGGCTCTGGTGCTACAATTGTTAATGGAATCCAGAATTTATGGACTGCACATCCGCCAGGAAACATTCAGTATGCAGCTTTGGTCATTGGTGGCTCAT
TTATCATTGAAGGTGCTTCTCTTATTGTTGCCATACAAGCTGTTAAGAAAGGTGCAGCTGCAGAAGGAATGACAGTTAGAGACTATATCTGGCGTGGTCA
TGACCCCACATCTGTTGCAGTCATGACAGAGGATGGTGCTGCGGTGACTGGACTTGCTATTGCTGCAGCGTCATTAGTTGCGGTCAATACCACAGGGAAT
GCAATTTATGATCCTATAGGGTCTATTATAGTTGGCAACTTGCTTGGGATGGTAGCCATATTTCTTATCCAGAGGAATCGGCATGCTTTGATTGGTAGAG
CAATGGATGACCATGATGTGGAGAAGGTCCTTCACTTCTTAAAAAATGATCCGGTTGTGGATGCACTATACGATTGCAAAAGTGAGGTGATTGGACCGGG
ATTTTTCAGATTTAAGGCAGAAATAGATTTCAATGGAGTAGTGGTTGTGCAGAATTATCTGAGTAGGACTGGACGTGGAGAGTGGTCCAGACAGTTTCGC
GAAGCTGCAAAGGAGAAGGATGACGCTGCATTGCTCAAGATCATGTCAAACTATGGTGAGGAAGTGGTAACTGCTCTAGGAAGTGAAGTTGATAGGCTTG
AAAAGGAGATTCAAGAGCTTGTTCCCGGTATTCGGCACGTTGATATTGAGGCACACAATCCAAGTGGCCCAAACCCATGA
AA sequence
>Potri.010G251300.1 pacid=42798463 polypeptide=Potri.010G251300.1.p locus=Potri.010G251300 ID=Potri.010G251300.1.v4.1 annot-version=v4.1
MQTSYRFLSRLYHSQKRNPSILCNRDLLFLLTHDSNGNTTVLEPNFTAQNQSFAYSSYTQSCGFFASKSSKRFAFWGLVSLYGNQNDQNSSYSYLAHRGF
FTRAKPVKRIEISDQHSQRAVTTALWCNFLVFSLKFGVWFSTNSHVMLAEVVHSIADFANQALLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFC
LGSGATIVNGIQNLWTAHPPGNIQYAALVIGGSFIIEGASLIVAIQAVKKGAAAEGMTVRDYIWRGHDPTSVAVMTEDGAAVTGLAIAAASLVAVNTTGN
AIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDVEKVLHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVVVVQNYLSRTGRGEWSRQFR
EAAKEKDDAALLKIMSNYGEEVVTALGSEVDRLEKEIQELVPGIRHVDIEAHNPSGPNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51610 Cation efflux family protein (... Potri.010G251300
[exp]
0 1
AT1G09810 ECT11 evolutionarily conserved C-ter... Potri.003G008400
[exp]
2.44 0.7258
AT5G52950 unknown protein Potri.012G033800
[exp]
3.16 0.7490
AT5G42470 unknown protein Potri.005G240000
[exp]
5.47 0.6716
AT2G31270 ATCDT1A, CDT1A,... ARABIDOPSIS HOMOLOG OF YEAST C... Potri.002G040100
[exp]
7.07 0.6855
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Potri.010G073600
[exp]
9.48 0.6593
AT4G11270 Transducin/WD40 repeat-like su... Potri.001G098700
[exp]
9.79 0.6612
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.006G215200
[exp]
11.61 0.6901 RSZ33.2
AT5G66540 unknown protein Potri.003G194550
[exp]
16.52 0.6653
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.008G215700
[exp]
20.00 0.6537
AT4G19003 VPS25 E2F/DP family winged-helix DNA... Potri.001G135700
[exp]
26.38 0.5768

Potri.010G251300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.