Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ZML1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51600 298 / 1e-100 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT3G21175 296 / 3e-100 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT4G24470 189 / 4e-58 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT2G46670 56 / 3e-09 CCT motif family protein (.1) AT2G46790 57 / 4e-09 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G02810 52 / 2e-07 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G60100 50 / 7e-07 APRR3 pseudo-response regulator 3 (.1.2.3) AT1G70700 50 / 7e-07 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G61380 50 / 8e-07 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G28340 49 / 1e-06 GATA GATA13 GATA transcription factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116550 [exp] 224 / 7e-72 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.002G110800 [exp] 223 / 2e-70 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152800 [exp] 218 / 2e-69 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.002G110900 [exp] 211 / 6e-67 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.005G152500 [exp] 207 / 2e-64 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 184 / 3e-55 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 175 / 8e-52 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042300 [exp] 67 / 5e-14 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.015G061900 [exp] 54 / 8e-08 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 209 / 4e-63 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 197 / 9e-62 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 194 / 1e-60 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 122 / 2e-32 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10000566 [exp] 57 / 7e-09 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 57 / 8e-09 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 57 / 8e-09 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 56 / 2e-08 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10037398 [exp] 52 / 1e-07 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10041313 [exp] 52 / 2e-07 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.010G251600.1 pacid=42797597 polypeptide=Potri.010G251600.1.p locus=Potri.010G251600 ID=Potri.010G251600.1.v4.1 annot-version=v4.1 ATGATGGATGGCATCAATGGAAGCAACATTTCTGCAAGGATGCAAACGAGCACAGAAGCTCAAAACCCATCGATGCAAATGCATTATGATCATCATCAAA ATCATCAGAATGGGATTCAAATGATGAATAATGCTAATGGGATGATCATGAACAGTGGAGATAATGATCAAGATCATAATGGCGTGGTGAACGGTGGTGG TGATGATGATGATCATGGGGGGACCATGATGGTGGCGGCTGATAATCATGGAAAAGAAAATGGAGATCAACTAACTCTTACATTTCAGGGTCAAGTTTAT GTTTTTGACTCTGTTTCACCTGGAAAAGTTCAAGCTGTGCTCTTGCTGTTGGGAGGCCGGGAAGTGCCTGCTGCAAGCACACCTACTGTTCCAATTACAA CACATCATAATAGTAATAATAGGGGGCTGTCAGGTACTCCCCAAAGGTTTAGTGTTCCTCAAAGATTAGCGTCTTTGATTAGATTTCGAGAAAAACGAAA AGAACGGAACTTTGACAAGAAAATTCGATATACTGTCCGTAAAGAGGTAGCACTTAGAATGCAACGGAATAAAGGCCAGTTCACCTCTTCAAAGCCCAAT CATGATGACTCTGCATCGGCAGCTACTAGCTGGGGTTCAAATGAGAGCGGGGGCTCCGATAGCAATGGATCCCAACATCAAGAGGCCATTTGTCGGCATT GTGGGATCAGTGAGAAGTCTACACCAATGATGCGGCGTGGACCTGAAGGGCCAAGGACACTTTGTAATGCATGCGGACTTATGTGGGCAAATAAGGGAAC TTTGAGGGACCTCTCCAAGGCAGCTCCCCATACTGGACCCAGCTCTTCTTCCATGAACAGCAATGCCATGGATGGAAATACTGATGGAAACCAAAGAGTC GCATGGAACAATGACTTCTCATGA
AA sequence Show only first row Show all	>Potri.010G251600.1 pacid=42797597 polypeptide=Potri.010G251600.1.p locus=Potri.010G251600 ID=Potri.010G251600.1.v4.1 annot-version=v4.1 MMDGINGSNISARMQTSTEAQNPSMQMHYDHHQNHQNGIQMMNNANGMIMNSGDNDQDHNGVVNGGGDDDDHGGTMMVAADNHGKENGDQLTLTFQGQVY VFDSVSPGKVQAVLLLLGGREVPAASTPTVPITTHHNSNNRGLSGTPQRFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPN HDDSASAATSWGSNESGGSDSNGSQHQEAICRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPHTGPSSSSMNSNAMDGNTDGNQRV AWNNDFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.010G251600 [exp]	0	1	ZML1.1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	3.16	0.9182	CYP51.2
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	4.69	0.9120
AT5G50350			unknown protein		Potri.010G247100 [exp]	5.91	0.8860
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	10.53	0.9035	Pt-CLF.1
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	11.31	0.8913	ALDH22.1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	13.19	0.8833
AT4G27490			3'-5'-exoribonuclease family p...		Potri.004G212500 [exp]	16.94	0.8561
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	19.44	0.8785
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.017G057500 [exp]	22.44	0.8693
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G128000 [exp]	23.45	0.8763

Compare expression of checked genes

Potri.010G251600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.