Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51580 434 / 1e-144 RNA-binding KH domain-containing protein (.1) AT5G15270 172 / 3e-46 RNA-binding KH domain-containing protein (.1.2) AT5G53060 140 / 5e-35 RNA-binding KH domain-containing protein (.1.2) AT5G64390 130 / 4e-31 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 127 / 5e-31 RNA-binding KH domain-containing protein (.1.2.3) AT2G22600 127 / 9e-31 RNA-binding KH domain-containing protein (.1) AT5G46190 105 / 2e-23 RNA-binding KH domain-containing protein (.1) AT4G18375 102 / 2e-22 RNA-binding KH domain-containing protein (.1.2) AT4G26000 81 / 6e-16 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 79 / 4e-15 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112200 [exp] 273 / 2e-82 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 198 / 2e-54 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.004G123400 [exp] 168 / 8e-45 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.007G116300 [exp] 166 / 3e-43 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.017G085500 [exp] 162 / 1e-42 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 163 / 2e-42 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.007G012000 [exp] 154 / 3e-40 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.012G017200 [exp] 155 / 1e-39 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.007G011900 [exp] 147 / 1e-36 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034831 [exp] 498 / 7e-169 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10007236 [exp] 210 / 1e-58 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 209 / 3e-58 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 174 / 5e-47 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 175 / 8e-47 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10035640 [exp] 162 / 9e-42 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 148 / 3e-37 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10022390 [exp] 127 / 1e-30 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 123 / 2e-29 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 122 / 1e-28 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.010G251700.1 pacid=42797696 polypeptide=Potri.010G251700.1.p locus=Potri.010G251700 ID=Potri.010G251700.1.v4.1 annot-version=v4.1 ATGGACACTCCTCCAATAACTCCCACCAAACGCTCCCAAACCGAACCCACACAAATCCGGATCCTCTGCCCGTCACTAAAAACCGGCGCCGTCATCGGCA AAGGCGGCTCCACCGTCCGTCATATCCAATCTCTCACCGGCGCCAAAATCCGCCTCCTTGACGACCCTCACATTCCCTATTGCGAAGACCGCATAATCCT CATTACCCTGAACAGTGGCAAGGTCCCCAAATCAGACGACTCCAACAACGCCACCTCCGATCACAACAAAGAAGATGCCAATGACGGAGAGTGCAGTTCT GGTGGTGGTGGTGGTGAAGAGGAGGGGTGGGGTCCAGTGAAGAAAGCGGTGGTTAGGGTTTTTGAGAAGATAGTGAAAGGGGACAGTGAGGAGGAGTTGA GCGAAGCTGTGGTGGTGACGTGTAAGGTTCTGATTGGTAGTGGTGGTAGTAATCAGGGAGGGAGTTTCTCTAAGGTTTTGGAGAAAATTAGAGTGGAGAG TGGAGCGCAAGTTAGGGTTTCGAATCGCGAGCAAATTCCTGCTTGTGCTTCTCCTGGTGATGAATTGATTCTGATTACTGGAAGTTTTTCAGCTGTTAAG AAAGCACTCTTGTCTGTTTCGAGTTGTATTCAAGATAGCCCGAGAGCAGAAACTGCCAATTTTGGTGCAGCGGGATTCCATGGAAATGCTATGCCTGCGC AAGGTGACTTGCATCAGTGGGGTTATGGACCTGGTAATCATGCTGCAGACTATCATCCAAGAGGGTATTCTCCTAATTTTGAAGAGGACGTTGTATTTAG GCTGTTATGCCAGGCTGATAAAGTTGGCAGTTTGATAGGGAAAGGTGGCTCTGTAGTACGGGCTTTGCAAAATGAGACGGGTGCATCTATCAAAATTGCT GAAGGTGTATCTGATTCAGATGAACGTGTGGTTGTCATATCTGCAAGAGAGAATTCAGAACAAAGACATTCTCCTGCTCAGGATGCTGTTATTCGTGTGC AATCCAGAATTGCAGAGATTGGATTTGAGCGTGGTGCCAGAATTGTTGCTCGGCTTCTTGTGCATCCACAACAGATAGGTGTTTTGTTGGGTAAAGGAGG CAAGATCATAAATGAAATGAGACATGTTACTGGTGCTAGTATATGCATATTTCCAAAGGAGCAAGCTTCAAAGTATGGTTCTCAAACTGAAGAAGTAGTT CAGGTTCTTGGCAGCTTGCAAGCTGTACGGGATGCTCTATTTCAAATAACAAGCAGACTTCGGGACACTATATTTCCTGTGAAGCCACCATTCTCAAACA CTGCTCCCTTGCCTTATCCACCACCCCCATTTCCAGAAATGCATCCCCCTCAGTTTAGGCCAAGACCTAATCCTACCTCTCCAGGTCCTTACCCTTCTCC TGTTGGACCTTTCCAAGGCATGGATCGTTCTGCTATTCCCTCCCACCCCTTAGACCACCAGCCTCCATTTTCATATGGTATGGATCGCAGTGGTCCACCA AATTTGGACCGAGCTCCCTATTCATATGGTAGCGATAGACCAGGACATGGTCCTCCATTTGAAAGTTCTCCAAGATCATGGACTGCTCAGCCATTTAGCA ATGGGAACCTAAGGGGAGGTGCTGATCTAGGTTCTGGCTCGGTTGCAAGAAATGGGCATCCTGCAAGCAGTGGAAATCTAGCACCGAGTATGGCTGGCAC ATCTGTTGAGGTTATCATTCCTCAAAAACTGCTGACTCATGTATATGGAGAGAGTAATAGTAATTTGACTCAGATCAGACAGATTTCAGGTGCAAATGTT CTCATTCACGACCCAAAGCCCGGGGCAACCGAAGGTTTGGTGGTAGTGTCTGGAACATCAGATCAAATGCGTGCTGCACAGAGCCTAATCCATGCCTTTA TTCTTTATGGACAGACAATTCATTGA
AA sequence Show only first row Show all	>Potri.010G251700.1 pacid=42797696 polypeptide=Potri.010G251700.1.p locus=Potri.010G251700 ID=Potri.010G251700.1.v4.1 annot-version=v4.1 MDTPPITPTKRSQTEPTQIRILCPSLKTGAVIGKGGSTVRHIQSLTGAKIRLLDDPHIPYCEDRIILITLNSGKVPKSDDSNNATSDHNKEDANDGECSS GGGGGEEEGWGPVKKAVVRVFEKIVKGDSEEELSEAVVVTCKVLIGSGGSNQGGSFSKVLEKIRVESGAQVRVSNREQIPACASPGDELILITGSFSAVK KALLSVSSCIQDSPRAETANFGAAGFHGNAMPAQGDLHQWGYGPGNHAADYHPRGYSPNFEEDVVFRLLCQADKVGSLIGKGGSVVRALQNETGASIKIA EGVSDSDERVVVISARENSEQRHSPAQDAVIRVQSRIAEIGFERGARIVARLLVHPQQIGVLLGKGGKIINEMRHVTGASICIFPKEQASKYGSQTEEVV QVLGSLQAVRDALFQITSRLRDTIFPVKPPFSNTAPLPYPPPPFPEMHPPQFRPRPNPTSPGPYPSPVGPFQGMDRSAIPSHPLDHQPPFSYGMDRSGPP NLDRAPYSYGSDRPGHGPPFESSPRSWTAQPFSNGNLRGGADLGSGSVARNGHPASSGNLAPSMAGTSVEVIIPQKLLTHVYGESNSNLTQIRQISGANV LIHDPKPGATEGLVVVSGTSDQMRAAQSLIHAFILYGQTIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51580			RNA-binding KH domain-containi...		Potri.010G251700 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	1.00	0.8688
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.003G105000 [exp]	4.47	0.7890
					Potri.007G125700 [exp]	4.58	0.7985
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.008G103000 [exp]	7.74	0.8036
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	9.48	0.7890
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	13.49	0.7856
AT2G28940			Protein kinase superfamily pro...		Potri.009G031500 [exp]	15.96	0.6890
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.017G090300 [exp]	16.49	0.7047
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	16.97	0.7743
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	18.97	0.7753

Compare expression of checked genes

Potri.010G251700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.