Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51540 638 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27220 557 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44030 44 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 42 / 0.0005 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G03000 42 / 0.0007 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 42 / 0.0008 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006200 [exp] 791 / 0 AT1G51540 662 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G334800 [exp] 296 / 3e-98 AT3G27220 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 45 / 6e-05 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.011G046100 [exp] 44 / 0.0001 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 44 / 0.0001 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 44 / 0.0002 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 43 / 0.0005 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G037400 [exp] 42 / 0.0007 AT1G16250 93 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034826 [exp] 646 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10033376 [exp] 640 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014602 [exp] 503 / 5e-178 AT3G27220 555 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10032070 [exp] 490 / 8e-173 AT3G27220 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13964 [poplar] [flax] Kelch_6 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.010G252100.1 pacid=42798332 polypeptide=Potri.010G252100.1.p locus=Potri.010G252100 ID=Potri.010G252100.1.v4.1 annot-version=v4.1 ATGGTAAGGTCATCAGGGAAGCAAAAATCAACAAAACTGGTGATACTTTGTGTGGTTTTATTAGGGTTTGGCCTGATTGCTGATTATCTGTGGGCTTCTT CTCCACATTTCGCTTCTTCTTCTTATTTATCCAATTGGGTTCCTGCTGATAATTCTCAATCTCATGTAATTATTCCAAAACAAGAACCGCATCATGTTGA CACTAAACCCCCAAAAATAAAGGCAGATGGTGCCCATGATCGATCCTTATCGGCTACATTTGCTGATTTGCCTGCACCGGAACTGAAATGGGAGAAAATG GCTAATGCACCTGTGCCTCGTCTAGATGGGGCTGCGATACAGATTAAGGATCTTCTATACGTTTTTGCTGGATATGGAACGATTGATCTTGTGCATTCAC ATGTTGATATTTACAATTTTACGGATAATACATGGGGACGGAGATTTAATATGCCTAAAGAAATGGCTCATTCACATTTGGGAATGGTCACAGATGGGAG ATACATTTATGTTGTCACTGGACAATATGGCCCACAATGCAGAGGACCTACAGCTCGTAATTTTGTGCTAGATACCAAGACAAAGCAATGGCAGGACTTG CCACCTTTACCAGTTCCTAGATATGCACCAGCAACTCAACTTTGGAGAGGTAGACTCCATGTGATGGGTGGCAGCAAGGAAAATCGGCACACTCCAGCAT TAGAGCATTGGAGTCTTGCTGTAAAGGATGGGAAAGCATTGGAAAAGGAATGGAGGCCTGAAATACCCATTCCTCGTGGAGGACCTCATCGCGCTTGTGT CATGGTTAGTGATCGACTGCTCATTATTGGTGGTCAGGAAGGTGATTTTATGGCCAAGCCTGGATCACCTATTTTCAAATGCTCTCGTAGGAATGAGATA GTATATGATGAGGTCCACATGCTGGATGATGAGATGAAGTGGAAACCTTTACCTCCTATGCCGAAGCCTGATTCTCATATTGAATTTGCTTGGGCGATTG TTAATAATTCCATTGTTATTGCTGGAGGCACCACAGAAAAGCACCCTACAACTAAAAAGATGGTCCTGGTTGGTGAAGTTTTCCGGTTCAACTTAGACAC ACTGACATGGTCAGTAATCGGAAAACTTCCATATCGTGTCAAAACTACTCTGGTTGGGTTCTGGAATGGATGGTTGTACTTCACATCAGGACAGCGAGAT AGAGGACCAGATGATCCAGCACCAAAAAAAGTCATTGCAGATATGTGGAGAACCAAACTGAGATTGAACTCATGA
AA sequence Show only first row Show all	>Potri.010G252100.1 pacid=42798332 polypeptide=Potri.010G252100.1.p locus=Potri.010G252100 ID=Potri.010G252100.1.v4.1 annot-version=v4.1 MVRSSGKQKSTKLVILCVVLLGFGLIADYLWASSPHFASSSYLSNWVPADNSQSHVIIPKQEPHHVDTKPPKIKADGAHDRSLSATFADLPAPELKWEKM ANAPVPRLDGAAIQIKDLLYVFAGYGTIDLVHSHVDIYNFTDNTWGRRFNMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTKTKQWQDL PPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWRPEIPIPRGGPHRACVMVSDRLLIIGGQEGDFMAKPGSPIFKCSRRNEI VYDEVHMLDDEMKWKPLPPMPKPDSHIEFAWAIVNNSIVIAGGTTEKHPTTKKMVLVGEVFRFNLDTLTWSVIGKLPYRVKTTLVGFWNGWLYFTSGQRD RGPDDPAPKKVIADMWRTKLRLNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	0	1
AT2G34560			P-loop containing nucleoside t...		Potri.011G085200 [exp]	1.00	0.7874
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	8.94	0.7152
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	8.94	0.6836
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	12.12	0.6856
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	21.79	0.6598
AT1G43860			sequence-specific DNA binding ...		Potri.002G073200 [exp]	22.44	0.6591
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	24.97	0.6557
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	26.11	0.6075
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	26.83	0.6254
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	27.34	0.6460

Compare expression of checked genes

Potri.010G252100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.