Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51550 500 / 4e-175 Kelch repeat-containing F-box family protein (.1) AT5G57360 130 / 3e-32 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 128 / 9e-32 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 118 / 2e-28 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G36360 77 / 8e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G18610 64 / 1e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G08420 59 / 7e-09 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 58 / 9e-09 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G03445 54 / 1e-07 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006300 [exp] 758 / 0 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.018G090800 [exp] 124 / 4e-30 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 122 / 9e-30 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G135200 [exp] 120 / 5e-29 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 115 / 3e-27 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.015G059400 [exp] 67 / 2e-11 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 64 / 1e-10 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 62 / 6e-10 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 60 / 2e-09 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034827 [exp] 541 / 0 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 541 / 0 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1) Lus10019169 [exp] 125 / 2e-30 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 124 / 5e-30 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10020003 [exp] 119 / 6e-29 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10015531 [exp] 119 / 1e-28 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 117 / 7e-28 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 117 / 8e-28 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030757 [exp] 104 / 1e-23 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 102 / 5e-23 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.010G252200.1 pacid=42797820 polypeptide=Potri.010G252200.1.p locus=Potri.010G252200 ID=Potri.010G252200.1.v4.1 annot-version=v4.1 ATGACTACTTTCTTCATGGCTGAGACAAGCACTAGTACTACAAGCAGCAACATTGGATCGTCGTCGCCAATTGTTAAGCTAGCTCAAGACCATCTCTTCA CAATCTTGCTTCTGCTTCCTATAGATTCACTCATCTCCTTTGCCAGGACTTGCAAAAGGTTCAGGTCCTTAACAAGTTCTGATACACTGTGGGAGTCCAT ATGCAGGAGGGAGTGGGGGTCCACATCAGTGGATGCCCTCAAGTCTTCTATCAATACCAAAAACAATCAGCAGTTGCCATGGATGAGGCTATACAAGCAG GTGTCTCAGCTTGACTCAGTTTCTTGCCATAAACTGTCCGACCCAGATAGTGAATTGATGCTCCCAACTCCCAGGGCTTCTCACTGTCTTAACTTTGTAT CTGATTGCCTGGTCTTGTTTGGTGGTGGCTGTGAAGGAGGGCGAGATCTCGATGATACATGGGTGGCATACATAGGTAATGATTTTCAAAGGATGCTGAA GTGGCAGAAAGTTAATTCAGGAATTCCAAACGGGAGATTTGGGCATGCATGCATCGTCATTGGCGATTATCTGGTGCTCTTTGGAGGAATTAATGATCGT GGGATTCGTCAAAATGATACATGGGTGGGGAAAGTAGTGCTCAGTGAGAACCTTGGTATAACATTGTCATGGAGGCTGCTTGATGTGAGATCCATAGCAC CACCTCCCCGTGGGGCTCATGCTGCTTGCTGCATTGATAAAAGTACAATGGTCATCCATGGAGGGATTGGATTGTACGGCCTTAGAATGGGAGACACTTG GATTCTAGAACTTTCAGAAAATTTCTGTTCTGGAACATGGAGGGAGCTGGTGACTCATCCATCACCTCCAGCTCGTTCAGGACACACATTAACATGCATC GAAGGAACAGGAATTGTTCTATTTGGAGGAAGAGGTTCAGGTTATGATGTGCTGCATGATGTCTGGCTCTTGCAGGTGTCTGAGGTTGAACTCAAGTGGA TACAGATTCTCTATAATTTGCAAGACATACCTGCAGGAGTCTCCCTCCCACGAGTCGGCCACTCAGCCACACTGATTTTGGGAGGTCGGCTGCTAATCTA TGGAGGTGAAGATTCACAGCGGCACAGGAAGGACGATTTTTGGGTATTGGATGTTAGTAAGATCCCATCAAATAAAGCGCAGTCTCCATTAAACTCAAGG GGATTGCAGGCAAATAATATGTGGAAAATGCTCAAGGCAAAGGGTTATAAACCCTACCGCAGATCATTCCACCGAGCCTGTGCGGATCATTCAGGGTGTC GCTTGTACGTTTTTGGTGGAATGGTGGATGGCTTACTTCAGCCTGCCGAAGCATATGGGTTGAGGTTTGATGGGGAGCTCTTTCTGGTCAAATTGGAGCT GGAAACAGATATAGTAAGGTGCTAA
AA sequence Show only first row Show all	>Potri.010G252200.1 pacid=42797820 polypeptide=Potri.010G252200.1.p locus=Potri.010G252200 ID=Potri.010G252200.1.v4.1 annot-version=v4.1 MTTFFMAETSTSTTSSNIGSSSPIVKLAQDHLFTILLLLPIDSLISFARTCKRFRSLTSSDTLWESICRREWGSTSVDALKSSINTKNNQQLPWMRLYKQ VSQLDSVSCHKLSDPDSELMLPTPRASHCLNFVSDCLVLFGGGCEGGRDLDDTWVAYIGNDFQRMLKWQKVNSGIPNGRFGHACIVIGDYLVLFGGINDR GIRQNDTWVGKVVLSENLGITLSWRLLDVRSIAPPPRGAHAACCIDKSTMVIHGGIGLYGLRMGDTWILELSENFCSGTWRELVTHPSPPARSGHTLTCI EGTGIVLFGGRGSGYDVLHDVWLLQVSEVELKWIQILYNLQDIPAGVSLPRVGHSATLILGGRLLIYGGEDSQRHRKDDFWVLDVSKIPSNKAQSPLNSR GLQANNMWKMLKAKGYKPYRRSFHRACADHSGCRLYVFGGMVDGLLQPAEAYGLRFDGELFLVKLELETDIVRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51550			Kelch repeat-containing F-box ...		Potri.010G252200 [exp]	0	1
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	2.44	0.9648
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.009G043200 [exp]	4.00	0.9610
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	6.00	0.9486
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	6.32	0.9502
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G030701 [exp]	8.94	0.9391
					Potri.001G033500 [exp]	11.22	0.9317
AT1G62760			Plant invertase/pectin methyle...		Potri.001G119300 [exp]	12.32	0.9446
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	13.03	0.9359
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	13.85	0.9562
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	14.83	0.9529

Compare expression of checked genes

Potri.010G252200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.