Plant FIBer expression Database

Potri.010G252400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16860 647 / 0 Ubiquitin-specific protease family C19-related protein (.1)
AT1G78880 636 / 0 Ubiquitin-specific protease family C19-related protein (.1)
AT4G22290 335 / 1e-110 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G252500
[exp]
782 / 0 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.008G006000
[exp]
748 / 0 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252000
[exp]
664 / 0 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.008G006100
[exp]
663 / 0 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.011G022600
[exp]
330 / 4e-109 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1)
Potri.004G002000
[exp]
321 / 9e-106 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1)
Potri.002G176200
[exp]
217 / 5e-67 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033374
[exp]
622 / 0 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Lus10034825
[exp]
608 / 0 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Lus10005996
[exp]
177 / 1e-51 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1)
Lus10030215
[exp]
177 / 2e-50 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G252400.3 pacid=42797896 polypeptide=Potri.010G252400.3.p locus=Potri.010G252400 ID=Potri.010G252400.3.v4.1 annot-version=v4.1
ATGGGTTCCAGATACCCGTCTCACCGACTTGGCAATGGCCTTGTTGTATCTGGTCGACCTGAGCAGCCAAAAGAAAAGGCTCCAACAATGAGCTCAGCTG
CCATGCCTTACACAGGTGGGGATATTAAGAAATCAGGAGAGCTGGGGAAAATGTTTATCCCTTCGGAAGGCTCTAAGTCTAGGAAATCTGGGCCACTAAC
TGGGCCTCCTTCAAGGACTGGATCTTTTGCAGGGGCTGCTTCACATTCAGGTTCGATGATGTCAAATGCTGCTCCTCGTGCTGGCTATACTACATCGGGT
CCTGTACCCTCCGGAGGCTTGCCTGGTTCAGCTTCACTAAAGAAATCGAGTTCTGGACCACTAAATAAACATGGGGAACCCATAAAGAAGTCCTCTGGCC
CTCAATCTGGTGGAGTAACGCGACAAAATTCTGGATCTATTCCATCAGCCCTGCCAGCAACCGGTCTCATAACATCTGGACCTATTTCTTCAGGACCATT
AAATTCTTCTGGTGCTCCTCGGAAAGTATCTGGTCCCTTGGAATCCACAGGTTCAATGAAATTAAACAGCTCCTCCATTAGTAACAACCCAGCCGTGACT
ACTTTAAGTCATGATGATGACTATTCTGTGAGGAAGAACTTCCCAAAAACAGTAGTATGGTCGGTGATACTGATTTTTGTGATGGGATTGCTTGCTGGTG
GTTTTATTCTTGGAGCTGTTCACAATGCCATCCTCCTCGTTGTTGTTGCAGTTCTTTTTGTCATAGTTGCTGCATTAGTTGTTTGGAACATGTGTCGGGG
AAGTAGATCTATCATAGAGTTCATTGGCCGTTATCCTGATACTGATCTCAGAACTGCAAAAAATGGACAATATGTGAAAGTTTCTGGGGTGGTTACCTGT
GGCAATGTCCCTTTGGAGTCTTCATTCCAAAGAATTCCTAGATGTGTCTATACCTCTACAAGATTATATGAGTATCGCGCATGGGGTTCAAAACCAGCCA
ACCCTAATCACCGCCATTTTACATGGGGACTGAGATCATCAGAGACGCATGGTGTTGATTTCTACATCTCTGATTTCCAATCTGGTTTAAGAGCATTGAT
CAAAACTGGCAGTGGCACAAGGGTAACCCCTTTTGTTGATGATTCCTTTGTTGTTGATATCAACCCTGGAAATAAAGACCTGTCTCCAGAGTTTGTCAGG
TGGCTGGGAAAGAGAAATCTTTCGAGTGATGAGCGTCTAATGAGATTGAAAGAAGGGTACATCAAAGAAGGCAGCACTGTTAGCGTGATGGGAATTGTTC
AGAGAAATGAAAATGTGCTTATGATAGTCCCGCCTCCGGAGCCATTGGCAACTGGATGGCAATGGCCCAGATGCATCTTTCCAGCTAGCCTTGACGGTAT
TGTTTTGAGACATGAAGATACATCAGATGTTGATGTGATACCTGTATAG
AA sequence
>Potri.010G252400.3 pacid=42797896 polypeptide=Potri.010G252400.3.p locus=Potri.010G252400 ID=Potri.010G252400.3.v4.1 annot-version=v4.1
MGSRYPSHRLGNGLVVSGRPEQPKEKAPTMSSAAMPYTGGDIKKSGELGKMFIPSEGSKSRKSGPLTGPPSRTGSFAGAASHSGSMMSNAAPRAGYTTSG
PVPSGGLPGSASLKKSSSGPLNKHGEPIKKSSGPQSGGVTRQNSGSIPSALPATGLITSGPISSGPLNSSGAPRKVSGPLESTGSMKLNSSSISNNPAVT
TLSHDDDYSVRKNFPKTVVWSVILIFVMGLLAGGFILGAVHNAILLVVVAVLFVIVAALVVWNMCRGSRSIIEFIGRYPDTDLRTAKNGQYVKVSGVVTC
GNVPLESSFQRIPRCVYTSTRLYEYRAWGSKPANPNHRHFTWGLRSSETHGVDFYISDFQSGLRALIKTGSGTRVTPFVDDSFVVDINPGNKDLSPEFVR
WLGKRNLSSDERLMRLKEGYIKEGSTVSVMGIVQRNENVLMIVPPPEPLATGWQWPRCIFPASLDGIVLRHEDTSDVDVIPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16860 Ubiquitin-specific protease fa... Potri.010G252400
[exp]
0 1
AT2G40120 Protein kinase superfamily pro... Potri.010G188400
[exp]
1.41 0.9622
AT2G34410 RWA3 REDUCED WALL ACETYLATION 3, O-... Potri.001G352300
[exp]
2.44 0.9543
AT1G16860 Ubiquitin-specific protease fa... Potri.010G252500
[exp]
3.74 0.9558
AT4G10840 Tetratricopeptide repeat (TPR)... Potri.014G100400
[exp]
4.00 0.9442
AT2G03480 QUL2 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800
[exp]
4.47 0.9432
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Potri.015G060100
[exp]
6.92 0.9291
AT4G28500 NAC ANAC073, SND2, ... SECONDARY WALL-ASSOCIATED NAC ... Potri.007G135300
[exp]
7.00 0.9411
AT3G14170 Plant protein of unknown funct... Potri.003G070200
[exp]
8.00 0.9331
AT1G75280 NmrA-like negative transcripti... Potri.002G034400
[exp]
8.36 0.9336
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.008G069900
[exp]
8.83 0.9412

Potri.010G252400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.