Plant FIBer expression Database

Potri.010G252500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16860 646 / 0 Ubiquitin-specific protease family C19-related protein (.1)
AT1G78880 642 / 0 Ubiquitin-specific protease family C19-related protein (.1)
AT4G22290 338 / 4e-112 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G006000
[exp]
778 / 0 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252400
[exp]
771 / 0 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.008G006100
[exp]
660 / 0 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252000
[exp]
657 / 0 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.011G022600
[exp]
328 / 1e-108 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1)
Potri.004G002000
[exp]
320 / 5e-105 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1)
Potri.002G176200
[exp]
209 / 8e-64 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033374
[exp]
617 / 0 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Lus10034825
[exp]
595 / 0 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Lus10005996
[exp]
176 / 4e-51 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1)
Lus10030215
[exp]
173 / 1e-48 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G252500.5 pacid=42798832 polypeptide=Potri.010G252500.5.p locus=Potri.010G252500 ID=Potri.010G252500.5.v4.1 annot-version=v4.1
ATGGGTTCCAGATACCCATCTCATCGACTTGGCAATGGCCTTGTCGTATCCGGTCGACCTGAGCAGCCAAAAGAAAAGGCTCCAACAATGAGCTCAGCTG
CCATGCCTTATACAGGTGGGGATATTAAGAAATCAGGAGAGCTGGGGAAAATGTTTATCCCTACGGAAGGCTCCAAGTCTAGGAAATCTGGGCCAATAAC
TGGGCCTCCTTCAAGGACTGGATCTTTTGCAGGGGCTGCTTCACATTCAGGGTCAATGATGTCAAATGCTGCTTCTCGTGCTGGCTATACCACATCGGGT
CCTTTATCCTCTGGAGGCTTGCCTGGTTCAGCCTCACTAAAGAAATCAAGTTCTGGACCACTAAATAAACATGGGGAACCCATAAAGAAGTCCTCTGGCC
CTCAATCTGGTGGAGTAACGCGACAAAATTCTGGATCTATTCCATCAGCCCTGCCAGCAACCGGTCTCATAACATCTGGACCTATTTCTTCAGGACCATT
AAATTCTTCCGGTGCTCCTCGGAAAGTATCTGGTCCTTTGGAATCCACAGGTTCAATGAAATTAAATAGCTCCTCCATTAGTAACAACCCAGCTGTGACT
ACTTTAAGTCAGGATGATGACTATTCTGTGAGGAAGAACTTCCCAAAAACTGTAGTATGGTTGGTGATACTGATTTTTGTGATGGGATTGCTTGCTGGTG
GTTTTATTCTTGGAGCTGTTCACAATGCCATCCTCCTTGTTGTCGTTGTGGTTCTTTTTGTCATAGTTGCTGCTTTAGTTGTTTGGAATATGTGTGGGGG
GAGAAGATATATCGTAGAGTTCACCGCTCGATATCCTGATGCTGATCTCAGAACTGCAAAAAATGGGCAATATGTGAAAGTTTCTGGGGTGGTTACTTGT
GGTAATGTCCCTTTGGAGTCTTCATTCCAAAGAGTTCCCAGATGTGTCTATACATCTACAAGATTGTATGAGTACCGTGCATGGGGTTCAAAACCTGCCA
ACCCTAGCCATCGCCACTTTACATGGGGGTTGAGATCATCTGAGAGGCATGTTGTTGACTTCTACATCTCTGATTTCCAATCTGGTTTGAGAGCATTGGT
TAAGACTGGCAATGGCACGAGGATAACCCCTTTTGTTGATGATTCGTTGGTTGCTGATATTAACCCTGAAAAGAAAGACTTGTCTCCAGAGTTTGTCAGG
TGGCTGGGAAAGAAAAATCTTTCAGGTGATGAGCGGTTAATGAGACTGAAAGAAGGGTACATCAAAGAAGGCAGCACTGTTAGCGTGATGGGGATTGTTC
AGAGAAATGACAATGTGCTTATGATAGTCGCACCGCCGGAGCCATTGGCAACTGGATGGCAATGGCCTAGATGCATCTTTCCAGCTAGCCTTGATGGTAT
TGTTTTGAGATGTGAAGACACATCAAATGATGATGTGATACCTGTGTAG
AA sequence
>Potri.010G252500.5 pacid=42798832 polypeptide=Potri.010G252500.5.p locus=Potri.010G252500 ID=Potri.010G252500.5.v4.1 annot-version=v4.1
MGSRYPSHRLGNGLVVSGRPEQPKEKAPTMSSAAMPYTGGDIKKSGELGKMFIPTEGSKSRKSGPITGPPSRTGSFAGAASHSGSMMSNAASRAGYTTSG
PLSSGGLPGSASLKKSSSGPLNKHGEPIKKSSGPQSGGVTRQNSGSIPSALPATGLITSGPISSGPLNSSGAPRKVSGPLESTGSMKLNSSSISNNPAVT
TLSQDDDYSVRKNFPKTVVWLVILIFVMGLLAGGFILGAVHNAILLVVVVVLFVIVAALVVWNMCGGRRYIVEFTARYPDADLRTAKNGQYVKVSGVVTC
GNVPLESSFQRVPRCVYTSTRLYEYRAWGSKPANPSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGNGTRITPFVDDSLVADINPEKKDLSPEFVR
WLGKKNLSGDERLMRLKEGYIKEGSTVSVMGIVQRNDNVLMIVAPPEPLATGWQWPRCIFPASLDGIVLRCEDTSNDDVIPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16860 Ubiquitin-specific protease fa... Potri.010G252500
[exp]
0 1
AT2G01070 Lung seven transmembrane recep... Potri.001G209400
[exp]
1.73 0.9661
AT1G04750 ATVAMP7B, ATVAM... VESICLE-ASSOCIATED MEMBRANE PR... Potri.003G177700
[exp]
2.00 0.9634 SAR1.5
AT2G34410 RWA3 REDUCED WALL ACETYLATION 3, O-... Potri.011G079400
[exp]
2.00 0.9690
AT5G43100 Eukaryotic aspartyl protease f... Potri.005G144600
[exp]
2.44 0.9686
AT3G27000 ATARP2, WRM, AR... WURM, actin related protein 2 ... Potri.001G326600
[exp]
3.00 0.9530 Pt-ARP2.1
AT1G16860 Ubiquitin-specific protease fa... Potri.010G252400
[exp]
3.74 0.9558
AT1G29200 O-fucosyltransferase family pr... Potri.011G068300
[exp]
4.00 0.9534
AT1G16860 Ubiquitin-specific protease fa... Potri.008G006000
[exp]
4.47 0.9597
AT2G41740 ATVLN2, VLN2 villin 2 (.1) Potri.006G050200
[exp]
4.79 0.9398 VLN2.1
AT1G13180 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDO... Potri.008G182700
[exp]
4.89 0.9480

Potri.010G252500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.