Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT1G11020 148 / 6e-43 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 135 / 5e-38 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G06330 45 / 2e-05 RING/U-box superfamily protein (.1.2.3) AT1G14260 44 / 4e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 44 / 4e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 44 / 5e-05 RING/U-box superfamily protein (.1) AT4G32670 44 / 9e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 43 / 9e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT5G18760 42 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005800 [exp] 464 / 4e-168 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.018G073400 [exp] 160 / 2e-47 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 155 / 2e-45 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G085900 [exp] 140 / 2e-40 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G081500 [exp] 138 / 7e-39 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 45 / 2e-05 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 44 / 5e-05 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.009G099400 [exp] 44 / 6e-05 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2) Potri.002G196600 [exp] 43 / 7e-05 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034832 [exp] 430 / 6e-151 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 358 / 8e-125 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033053 [exp] 148 / 8e-43 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016426 [exp] 140 / 1e-39 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019687 [exp] 139 / 3e-39 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10017764 [exp] 116 / 7e-32 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10033985 [exp] 45 / 5e-05 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 44 / 5e-05 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10019839 [exp] 45 / 6e-05 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10012791 [exp] 44 / 0.0001 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.010G252900.1 pacid=42798903 polypeptide=Potri.010G252900.1.p locus=Potri.010G252900 ID=Potri.010G252900.1.v4.1 annot-version=v4.1 ATGCAATTGGTATCAAATGATAGTCGCAAGGAAGATATTTCAGAAAGTGAACCGATCTTATCCCATTCTAACATTTCGCAGCACTCAGAAGAAGAATCAC CGTCCTCTCTTGAAATTAAATCTTTAGGAAGGGATTGTGAAATTCATGTTGATGATTCAGAGAGTATTCAGATTGATGAAACTTGCCATCTAGTGAATCC AGACCATCCACAGTGCCGTATATGCCTGGATAATGAAGGGGAAGACTTGATTGCACCATGTCATTGCAAAGGCACTCAGAAGTATGTCCATAGGTCATGT CTTGATAATTGGAGATCAACTAAGGAGGGCTTTGCATTTGCTCACTGTACAGAATGCAGAGCAATGTTTGTATTGCGGGCAAATGTCCCAGCAGATCGAT GGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCTAGGGACCATGCATTTATTTTTGTAGTAGTTCAGCTGATTGTTGCATTCTTGGGTGTGCTGGTGTA CAAGTTCTATGGGGAGGAACTAAGGGAAATGTTTGGCTATGAAGAGCATCCCTATGGATTCTATACTATGGCTGTTTTAGCGATTGTTTTGGTGGGTTTG CTCTATGGTTTCTTCATTGCTATAATATGTGGACAAAGGATCAATGAGCGCCACTATCATGTTCTTGCCAAACAAGAACTTACAAAGGAATATGTGGTGG AAGACAGAGAAGCTAGCAAGGATGTCCCTGAACTTGGAGCCAGTCATGTCTCGGAGCTAAGAATGTTGGGTCTTTATTAG
AA sequence Show only first row Show all	>Potri.010G252900.1 pacid=42798903 polypeptide=Potri.010G252900.1.p locus=Potri.010G252900 ID=Potri.010G252900.1.v4.1 annot-version=v4.1 MQLVSNDSRKEDISESEPILSHSNISQHSEEESPSSLEIKSLGRDCEIHVDDSESIQIDETCHLVNPDHPQCRICLDNEGEDLIAPCHCKGTQKYVHRSC LDNWRSTKEGFAFAHCTECRAMFVLRANVPADRWWLRLKFQFLVARDHAFIFVVVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYTMAVLAIVLVGL LYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREASKDVPELGASHVSELRMLGLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	3.87	0.6635
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	5.29	0.5462
AT1G79260			unknown protein		Potri.010G175600 [exp]	11.74	0.6204
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	18.73	0.5117
AT5G49470			PAS domain-containing protein ...		Potri.008G105100 [exp]	35.69	0.5464
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	45.03	0.5007
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	45.19	0.5486
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.009G078000 [exp]	46.64	0.5502
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.006G270601 [exp]	70.19	0.5218
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	81.58	0.5228

Compare expression of checked genes

Potri.010G252900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.