Plant FIBer expression Database

Potri.010G253100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03070 503 / 3e-174 MED8 mediator subunit 8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035721
[exp]
442 / 9e-152 AT2G03070 369 / 2e-123 mediator subunit 8 (.1)
Lus10037308
[exp]
239 / 1e-73 AT2G03070 219 / 2e-66 mediator subunit 8 (.1)
Lus10035722
[exp]
86 / 1e-20 AT2G03070 83 / 3e-20 mediator subunit 8 (.1)
PFAM info
Representative CDS sequence
>Potri.010G253100.1 pacid=42800147 polypeptide=Potri.010G253100.1.p locus=Potri.010G253100 ID=Potri.010G253100.1.v4.1 annot-version=v4.1
ATGGCAGCAATGGAAGGGGTGATGCAAGACCAATCACAGCTTCAGAATCAACAGCAACAACAGATGGTGGTGCCAGAGAGACTGAATCACGCAGTGCAAC
AACAGCTCAATTTGGAGTCTGTAAAGACTCGAGCAATCAGCCTCTTCAAAGCCCTCACTCGCATCCTTGAAGACTTTGACGCCTATGCTCGCACCAACAC
CACCCCTAAATGGCAAGATATTTTGGGGCAGTATTCCATGGTGAACCTTGAACTTTTCAGCATTGTGGATGAGATTAAGAAGGTTTCGAAGGCTTTTGTT
GTGCATCCAAAGAATGTTAATGCTGAAAATGCTACAATACTACCAGTTATGTTATCCTCGAAACTACTGCCAGAGATGGAAATGGATGACAATTCCAAGA
GAGAGCACTTGCTTCAGGGGATGCAAAGCTTGCCAATATCCTCACAAATCGAGAAGTTAAAGGCTAGAATAGATATGATTGCAGCAGCCTGTGAAGGTGC
TGAAAAAGTATTAGCAGATACTCGTAAAGCCTATCAGTTTGGCACCCGCCAAGGGCCCACGACTCTTCCAACTTTGGACAAGGCTCAGGCTGCTAAGATT
CTAGAACAAGAGAACTTGCTTCGAGCTGCTGTAAATGGTGGTGAAGGCCTACGAGTAACTGGAGACCAGAGACAGATGACATCTGCACTTCCAGTGCATT
TGGTGGATGTGCTGGCTGTGTCCGATGGAATGCATAGCTTCTCTGATTCTTCTGGGATGTATATGAAGAATACTCCGCCAATTTCGAATAGCATCAATAA
CCAAGGGTCTTTGTTACAGCAGCCTACTGGAACACCACTTCATGGAAGATCAGCTGCATCTCCTTCTGCTGCCACGAGTGCTACTTCATTTGACCACACA
ACACCATCCCCGCTGCCATATGCCAATTCACCTCGGTCTGGTACGAACATGATGAACACACCTTCTCCTCAGCAACAAGTTCAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAAGGCAAAAGATATTACTTGCTCAGCAACAGCTGAGGCAATCTTCTTTGCAAGCTTTGGGACAGAACCAAATGTCACAGATGCA
TGATTTACAGAGCCAGGGGCAGCAGAAGTTTCAGCCGTTACATGGACAACATCAGATGCAGTATTCTCAGCCAGTGGGCCACCAGCAATTTCAGAGTAGG
CAGCTATCCTCCGGACATGTTCAGCATGGCATGGGTCAAAGCCAACTCAATCAAGGAAATCAGTTAAATCGTCATTTAAGTCAGTTTTCTAGCGCTGCTA
ATACTTCATTGTTCAATACTGGTCAGGGAGCACCAAACACCCAGATGATTCCAAACATGTCTTCCACGATGTCATCACAGCCACCTGTAACACGAATGCA
GTTTGGATTAGCTGGTAACAATCCCCAGAGGAGTCTTGCTTCCACGGTTCTTAATGATCAGATGTATAATATGGGAGTATCCAATCCTGGTGGTATGATG
CCCATGCAGCAGCAGCAGCAGCAGCTTGGCTCTCAAGGTGCGTTTGGTAATATGCAACCAAATGCTCAGAATTTACAGTCAAGCATGGCAGCGCTTCAGA
ATGCATCACAGAACCATCCCAATTTTGCTCAACAGAGACAGCAAAATCAGCAGTAG
AA sequence
>Potri.010G253100.1 pacid=42800147 polypeptide=Potri.010G253100.1.p locus=Potri.010G253100 ID=Potri.010G253100.1.v4.1 annot-version=v4.1
MAAMEGVMQDQSQLQNQQQQQMVVPERLNHAVQQQLNLESVKTRAISLFKALTRILEDFDAYARTNTTPKWQDILGQYSMVNLELFSIVDEIKKVSKAFV
VHPKNVNAENATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSLPISSQIEKLKARIDMIAAACEGAEKVLADTRKAYQFGTRQGPTTLPTLDKAQAAKI
LEQENLLRAAVNGGEGLRVTGDQRQMTSALPVHLVDVLAVSDGMHSFSDSSGMYMKNTPPISNSINNQGSLLQQPTGTPLHGRSAASPSAATSATSFDHT
TPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPLHGQHQMQYSQPVGHQQFQSR
QLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMM
PMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03070 MED8 mediator subunit 8 (.1) Potri.010G253100
[exp]
0 1
AT2G02560 TIP120, HVE, ET... HEMIVENATA, CULLIN-ASSOCIATED ... Potri.003G000500
[exp]
1.00 0.7656 CAND1.2
AT2G05710 ACO3 aconitase 3 (.1) Potri.014G153400
[exp]
15.87 0.7042
AT5G58940 CRCK1 calmodulin-binding receptor-li... Potri.009G041900
[exp]
20.85 0.7413
AT1G79610 ATNHX6 Na+/H+ antiporter 6, ARABIDOPS... Potri.016G000200
[exp]
23.17 0.6440
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.010G198400
[exp]
27.74 0.6502 Pt-P5CS.1
AT4G23900 Nucleoside diphosphate kinase ... Potri.003G140600
[exp]
33.76 0.7373 Pt-NDK4.1
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.008G151300
[exp]
34.29 0.6923
AT3G50210 2-oxoglutarate (2OG) and Fe(II... Potri.007G047100
[exp]
36.52 0.6816 Pt-DIN11.1,2OGox15
AT2G03270 DNA-binding protein, putative ... Potri.006G054600
[exp]
37.04 0.6399
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.014G029000
[exp]
38.15 0.7170

Potri.010G253100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.