Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DWF5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50430 764 / 0 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT3G52940 149 / 5e-41 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005200 [exp] 830 / 0 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.006G116200 [exp] 142 / 2e-38 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253301 [exp] 71 / 4e-15 AT1G50430 49 / 6e-08 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035723 [exp] 764 / 0 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10033356 [exp] 756 / 0 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034811 [exp] 729 / 0 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10037309 [exp] 518 / 0 AT1G50430 489 / 2e-173 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10003377 [exp] 134 / 3e-35 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF01222 [poplar] [flax] ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence Show only first row Show all	>Potri.010G253200.1 pacid=42799773 polypeptide=Potri.010G253200.1.p locus=Potri.010G253200 ID=Potri.010G253200.1.v4.1 annot-version=v4.1 ATGGCAGAAACGAAGACTGTGCATTCGCCGCTGGTTACTTATTTTTCAATGCTTTCACTTCTCACTCTCTGCCCTCCTTTTGTTATTCTACTATGGTATA CAATGGTACATGCTGATGGGTCAGTTTGTCAAACTTGGGATTACTTGAAGCAACATGGCTTGCAAGGATTTATAAACATTTGGCCAAGGCCTACTGCAAT TGCCTGGAAAATTATTGCTTGTTATGCAGCATTTGAGGCTGCACTGCAGCTTCTTTTACCTGGAAAAAAGGTCGAGGGTCCAATCTCTCCTGAAGGAAAC CGACCTGTTTACAAGGCAAATGGTGTGGCAGCATATGTGGTGACTTTAGTTACCTATCTTAGCCTTTGGTGGTTTGGTATATTCAACCCCTCGATTGTTT ATGATAATTTGGGAGAAATATTTTCTGCTCTCATTTTTGGAAGCTTAGTCTTCTGTGTTTTCTTATACATAAAGGGTCATTTGGCTCCATCATCTACTGA TTCTGGATCATCTGGGAACATGATAATTGACTTCTATTGGGGTTTGGAGCTGTATCCTCGAATAGGAAAGAACTTCGACATCAAAGTTTTCACAAACTGC AGATTTGGGATGATGTCTTGGGCTGTTCTGGCATTAACCTATTGCATTAAGCAGTATGAGCAGAATGGGAAAGTAGCTGACTCCATGCTTGTAAATACAA TATTGATGCTGGTGTACGTCACAAAGTTTTTTTGGTGGGAAGCTGGTTACTGGAACACAATGGACATTGCACATGATCGAGCTGGATTTTATATTTGCTG GGGATGCTTGGTATGGGTTCCATCTGTGTATACTTCTCCCGGCATGTACCTTGTAAACCATCCTGTGAACCTTGGACTTCAGCTTGCACTCTATATACTA GCAGCAGGCATTCTCTCCATATATGTCAATTATGATTGTGACAGGCAAAGGCAAGAATTTCGCAGAACAAATGGCAAATGTTTGGTCTGGGGAAGGGCTC CATCAAAGATTGTGGCCTCATACACTACAACATCTGGGCAAACAAAGATAAGCCTCCTTTTGACATCGGGATGGTGGGGCTTATCTCGTCATTTCCATTA TGTACCTGAAATACTGGCTGCTTTTTTCTGGACTGTCCCGGCTCTTTTTAATCATTTCTTACCCTATTTCTATGTGATATTTCTGACCATCCTTCTGTTT GACCGAGCTAAAAGGGATGATGATCGATGTCGGTCCAAGTATGGGAAGTACTGGAAGTTGTACTGTGAGAAGGTTCGCTACAGGATTGTTCCTGGAATCT ACTAA
AA sequence Show only first row Show all	>Potri.010G253200.1 pacid=42799773 polypeptide=Potri.010G253200.1.p locus=Potri.010G253200 ID=Potri.010G253200.1.v4.1 annot-version=v4.1 MAETKTVHSPLVTYFSMLSLLTLCPPFVILLWYTMVHADGSVCQTWDYLKQHGLQGFINIWPRPTAIAWKIIACYAAFEAALQLLLPGKKVEGPISPEGN RPVYKANGVAAYVVTLVTYLSLWWFGIFNPSIVYDNLGEIFSALIFGSLVFCVFLYIKGHLAPSSTDSGSSGNMIIDFYWGLELYPRIGKNFDIKVFTNC RFGMMSWAVLALTYCIKQYEQNGKVADSMLVNTILMLVYVTKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGLQLALYIL AAGILSIYVNYDCDRQRQEFRRTNGKCLVWGRAPSKIVASYTTTSGQTKISLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLF DRAKRDDDRCRSKYGKYWKLYCEKVRYRIVPGIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	0	1	DWF5.2
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	3.31	0.8064
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.008G093400 [exp]	3.74	0.7816
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	7.34	0.7363	ATS9.2
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.015G028900 [exp]	9.38	0.7651
AT3G56130			biotin/lipoyl attachment domai...		Potri.010G183200 [exp]	9.64	0.6594
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	15.16	0.7462
AT1G72430			SAUR-like auxin-responsive pro...		Potri.001G164300 [exp]	15.62	0.6323
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	21.00	0.6402
AT5G36230			ARM repeat superfamily protein...		Potri.013G085600 [exp]	32.20	0.6864
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	32.86	0.6025	CGS1.1

Compare expression of checked genes

Potri.010G253200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.