Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20240 388 / 7e-135 Mitochondrial substrate carrier family protein (.1) AT4G32400 157 / 2e-44 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 86 / 2e-18 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 84 / 5e-18 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G01100 81 / 5e-17 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 79 / 2e-16 Mitochondrial substrate carrier family protein (.1) AT3G21390 79 / 3e-16 Mitochondrial substrate carrier family protein (.1) AT4G26180 77 / 1e-15 Mitochondrial substrate carrier family protein (.1) AT3G51870 76 / 3e-15 Mitochondrial substrate carrier family protein (.1) AT2G37890 76 / 4e-15 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004100 [exp] 540 / 0 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 155 / 1e-43 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 154 / 2e-43 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 93 / 5e-21 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 92 / 9e-21 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 92 / 1e-20 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 91 / 2e-20 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 90 / 6e-20 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 86 / 2e-18 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033351 [exp] 437 / 1e-153 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10034806 [exp] 431 / 3e-151 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 156 / 3e-44 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 155 / 1e-43 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 152 / 3e-42 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10032364 [exp] 95 / 8e-22 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 91 / 3e-20 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 89 / 1e-19 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032522 [exp] 88 / 6e-19 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 87 / 1e-18 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G253600.2 pacid=42797872 polypeptide=Potri.010G253601.1.p locus=Potri.010G253600 ID=Potri.010G253600.2.v4.1 annot-version=v4.1 ATGGATTTTGAAACTGAATCGCAGAAGAAAAAGAGCGGGGTTTTTGGAGACGTGTACGGTGGGATTACAATGGTGCTTCCCAAGGAGATAGATGATCCTA TTTCTCTACCTTCTCCTCCTTCTCTTGCTCCTCCTTTTGAGCTACGATTTCATCTTCCTGATCTCAAGCTTGCTGTTAGAGATTTCACGAAGACCAGAGA AGTCGGTGAGTTCCTCAGTGGGGCCTTAGCTGGGGCTATGACCAAAGCTGTACTTGCTCCTTTAGAAACCATCAGAACAAGAATGGTGGCAGGAAATGCA ATCAATATGCTTCGTATAATTCCCACTCAGGCAATTGAGCTAGGAACATTCGAATGCGTCAAGCGAGCAATGACATCAGCACAAGAGAAATGGAGTCAGA GTGAATGTCCAAGGGTGCAACTTGGTCCTGTTAGTTTGAACTTCTCTCTCTCCTGGATTTCTCCAGTTGCTGCTGCTGGTGCTGCTGCTGGAATTGTTAG CACACTTGCATGCCATCCTCTTGAAGTCTTGAAGGATAGATTGACTGTAAGCCGTGATATATACCCTAATTTAAGCATTGCCATCAGTAAGATTTACAAG GATGGAGGGATTGGAGCCTTTTATGCTGGCATTTCACCTACACTGATGGGCATGCTTCCATACAGTACATGCTACTATTTCATGTACGAGACGATGAAGA CATCTTATTGTGAAGCAAAAAATAGACATGTTCTAACCGGTTGGTGTTGGTATCTCGTCTTTTCTATTAGCCGATTGGTAATCAATTTACGTTTTGGATG CCTAGGTTTTACTGCTAGCACCCTTAGCTTTCCATTAGAGGTGGCCAGGAAACGACTAATGGAGGGAGCTCAGCAGGGTAAATGTCCACCCCACATGGCA GCAGCCCTCTCAGAAGTAATTAGGGAGGAGGGGCTGAGGGGACTTTACAGAGGTTGGGGTGCAAGCTGTTTAAAAGTGATGCCTTCCTCTGGCATCACTT GGATGTTTTATGAAGCTTGGAAAGATGTACTGCTTGTTGAGAAACAGCTTTTATAA
AA sequence Show only first row Show all	>Potri.010G253600.2 pacid=42797872 polypeptide=Potri.010G253601.1.p locus=Potri.010G253600 ID=Potri.010G253600.2.v4.1 annot-version=v4.1 MDFETESQKKKSGVFGDVYGGITMVLPKEIDDPISLPSPPSLAPPFELRFHLPDLKLAVRDFTKTREVGEFLSGALAGAMTKAVLAPLETIRTRMVAGNA INMLRIIPTQAIELGTFECVKRAMTSAQEKWSQSECPRVQLGPVSLNFSLSWISPVAAAGAAAGIVSTLACHPLEVLKDRLTVSRDIYPNLSIAISKIYK DGGIGAFYAGISPTLMGMLPYSTCYYFMYETMKTSYCEAKNRHVLTGWCWYLVFSISRLVINLRFGCLGFTASTLSFPLEVARKRLMEGAQQGKCPPHMA AALSEVIREEGLRGLYRGWGASCLKVMPSSGITWMFYEAWKDVLLVEKQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20240			Mitochondrial substrate carrie...		Potri.010G253600 [exp]	0	1
AT1G15200			protein-protein interaction re...		Potri.003G021900 [exp]	6.32	0.6613
AT5G63460			SAP domain-containing protein ...		Potri.012G096900 [exp]	6.70	0.6717
					Potri.003G157401 [exp]	12.24	0.6482
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G432400 [exp]	17.00	0.6093
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	20.78	0.6722	Pt-CIP111.1
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	20.97	0.5972
AT5G05590		PAI2	phosphoribosylanthranilate iso...		Potri.014G188400 [exp]	25.25	0.5532
AT3G49910			Translation protein SH3-like f...		Potri.007G085200 [exp]	39.45	0.6430	Pt-RPL26.2
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G433800 [exp]	46.66	0.5304
AT2G38610			RNA-binding KH domain-containi...		Potri.006G111400 [exp]	47.89	0.5424

Compare expression of checked genes

Potri.010G253600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.