Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 148 / 2e-40 F-box family protein (.1) AT3G16210 77 / 2e-15 F-box family protein (.1) AT5G49610 74 / 4e-14 F-box family protein (.1) AT3G17280 61 / 7e-10 F-box and associated interaction domains-containing protein (.1) AT1G47790 54 / 1e-07 F-box and associated interaction domains-containing protein (.1) AT5G18160 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G17490 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT3G49450 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT3G17530 49 / 3e-06 F-box and associated interaction domains-containing protein (.1) AT1G64290 49 / 4e-06 F-box protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067800 [exp] 156 / 1e-43 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.013G065500 [exp] 143 / 2e-38 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.005G043500 [exp] 139 / 3e-37 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.018G132800 [exp] 139 / 7e-37 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.003G215900 [exp] 138 / 2e-36 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.004G232700 [exp] 127 / 2e-34 AT5G07610 117 / 3e-31 F-box family protein (.1) Potri.005G124500 [exp] 89 / 4e-19 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.006G071100 [exp] 88 / 6e-19 AT5G07610 52 / 4e-07 F-box family protein (.1) Potri.007G027300 [exp] 82 / 8e-17 AT5G49610 80 / 2e-16 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042989 [exp] 127 / 4e-35 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10014320 [exp] 88 / 7e-19 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10017086 [exp] 82 / 4e-17 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10015048 [exp] 82 / 1e-16 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10037802 [exp] 81 / 1e-16 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10041733 [exp] 74 / 4e-14 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 74 / 4e-14 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10028682 [exp] 50 / 2e-06 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10012356 [exp] 50 / 2e-06 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10042547 [exp] 46 / 4e-05 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G254000.1 pacid=42799669 polypeptide=Potri.010G254000.1.p locus=Potri.010G254000 ID=Potri.010G254000.1.v4.1 annot-version=v4.1 ATGGGAGACTGTATAGGGAGAAAACAGCAAAACATTTCAATGGATCGAAACCTGTCTTCTGGGCCATCTGGAAGAACAGGGCAGGCAATAATGATCATGG ATGAAAAGGATATCATGATCGAAATACTTCATCGACTACCCTTAAAGTCGTTGTTGATATCCAAATGCGTGTGCAGATTGTGGAACCATCTCATCTCAGA TCCTATATTCATATCCAATTATTCGCGTAGAAACCCACAACATCATGTCTCTGGTTTCTTCTTACAAAAATTCTTGTTTCTTGAACAGTACTCGAAACTT GAGTTCATTACATGTGAAGGACAGGATGATGCTGCTCCTGAGCCATCTCTTTGTTTCATTGAAGATGATCAAGGTGTTTGTATACAACATTCCTGCAATG GCCTTCTTCTATGCAGCAGTTTTCGATGCCATGAAGATGATAGGAAGTACTACATCTGTAAACCCACCACTAAGCAATATCACCAACTGCCTAAACCTGG ATGCAAGATTGTGTTTGGCATTAACATAGCATATGATCCTACCATATCACCCCATTACAAAATCATATGCGTATGTGACTCCAACGCGATTAAGATGTAT GATTCAGCCATAGGATCATGGAGAGTCTCAGGAAATCATCAAGTTTTTTCCCATGTTTTGTTGTTCAATCGAGGTGTCTTTCTGAACCGTGCATTGCATT GGATTAGCAGAGGAGCCTTGGCACTTCGATTTGATATTGAACAAGAGCGTATGCTCACAATGCCAATGCCTCCAATCCCTGAGGGGCGGTCAGAAAGGAG ATTGGGATATTTCGGTGAATCGGGAGGGCATCTATGTCTCATTGAGATATATGGTCCTATAACTACTTGCTTTGATGTGATGAGGATGGAGAGTGACTAT TCAGGCTGGTCGGTGAGGTACCGTGTTGATCTTTCTAGAATAGCGTCTTCCTTTCCATCAATGGCGAGGAACAATGTGCAGGACATCCATCGTTACTTGT TCTCTATACTGCATCTAGCTGACAGATCACAAGTAGGAGAAGATGAATCATCCATGTGGCTGCATATTCCAGGCACATTCATCTCCTACAACCTTAAAGA TGGAAAATGGAGCAAGCTTCAAAGTATTTTACATCAAATAAACAAGATTGAAGAAGGTATGGGATTATGGCATTCATGGGAGGGAGTCCATCCATATACC AATACTCTTTGTTACTTTTGA
AA sequence Show only first row Show all	>Potri.010G254000.1 pacid=42799669 polypeptide=Potri.010G254000.1.p locus=Potri.010G254000 ID=Potri.010G254000.1.v4.1 annot-version=v4.1 MGDCIGRKQQNISMDRNLSSGPSGRTGQAIMIMDEKDIMIEILHRLPLKSLLISKCVCRLWNHLISDPIFISNYSRRNPQHHVSGFFLQKFLFLEQYSKL EFITCEGQDDAAPEPSLCFIEDDQGVCIQHSCNGLLLCSSFRCHEDDRKYYICKPTTKQYHQLPKPGCKIVFGINIAYDPTISPHYKIICVCDSNAIKMY DSAIGSWRVSGNHQVFSHVLLFNRGVFLNRALHWISRGALALRFDIEQERMLTMPMPPIPEGRSERRLGYFGESGGHLCLIEIYGPITTCFDVMRMESDY SGWSVRYRVDLSRIASSFPSMARNNVQDIHRYLFSILHLADRSQVGEDESSMWLHIPGTFISYNLKDGKWSKLQSILHQINKIEEGMGLWHSWEGVHPYT NTLCYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.010G254000 [exp]	0	1
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	8.88	0.8730
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	26.09	0.8682
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	30.49	0.8491
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	38.14	0.8663
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	42.28	0.8653
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	47.05	0.8599
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	49.02	0.8417
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	51.24	0.8064
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.013G106200 [exp]	51.96	0.8453
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	56.92	0.8322

Compare expression of checked genes

Potri.010G254000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.