Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 502 / 9e-174 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 353 / 2e-116 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 74 / 3e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 71 / 3e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 69 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 60 / 4e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 56 / 4e-08 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G64730 55 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002700 [exp] 563 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 481 / 1e-165 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 478 / 2e-164 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 347 / 3e-114 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 74 / 3e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 71 / 4e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 63 / 2e-10 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 60 / 1e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 61 / 2e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001411 [exp] 469 / 1e-161 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 468 / 1e-160 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 447 / 1e-152 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 444 / 4e-151 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 266 / 4e-83 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 261 / 2e-81 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 111 / 7e-28 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10003487 [exp] 72 / 1e-13 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 72 / 2e-13 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 71 / 3e-13 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G254300.1 pacid=42796806 polypeptide=Potri.010G254300.1.p locus=Potri.010G254300 ID=Potri.010G254300.1.v4.1 annot-version=v4.1 ATGGCTCAGCTTGTGGAGACAGTTGGCTCAAAAGGAGTCGTCAAAAGAACTGAATTTGTCAGAATCATAACAAGGGCATTGCACTCGCTTGGTTATGAGG AGATTGGAACCCTTTTGGAGAACCAATCAGGAATACCATTGCAATCACAAGAGATTAGCTCGTTCAAGAACCAAGTGTTGGCTGGAAACTGGGATCAAAG TGTGGAAACGTTGCATGCGATCAGTCTTCTGGACAAATCAACCCTGACTTCTCAGGCATCATTCTTGATATGGGAGCAGCAGTTCCTCGAATTTCTGAGG GACGATCATATTCTTGATTCCTTAAATACTCTAAGGAAAAAAATTGCGCCTCTTGATATAAATTCTAACCGTGTTCAAGAACTTGCTTCCTGTACCATCT CTCCTCCAGAGGATCTAAACATTGAGTCAAGGCCAGAGATTCTAGAGAAACTACATAACTTTCTTCCTCCGTCACTCATGATTCATCCAACAAGGTTAGA AAGTATTATTGAGGAGGCTATTAGTCTGCGACGATTAAGCTGCCTGTATCACAATATTTCAGATAGAAATGTCTCTTTGTACTCGGATCATAAGTGTGGA ATGAGCCGGCTTCCTTGTCAAGCAAAGCAGATTCTGAGCATGCACGTTGATGAAGTCTGGTTTCTGCAATTTTCACATAACGGAAAGTATTTGGCATCAT CGTCCAAGGATGAATCAGCAATCATATGGGAGGTTACAGATGGCGGTGAAGTGTTATTTGGGCATATACTTGGTCATGAGAAACCAGTTTTGACTGTTTC ATGGAGCCCTGATGATGACCAGTTACTTACTTGTGGCGAAGGAGAGGTTATCAAACGATGGGAAGCCAATTCGGGACGGTTGCTCCATGTTTATGAGAGA ACTGATTTTGGTTTTATTTCCTGTGCATGGTGTCCTGTTGGGTTTATACTTGCTGGTACGACTGACCAGAGCATCATCCTGTTGGATTTGGAAGGAGCGG AGCTGGATTCTTGGAAAGACTATGCACTCAGGATGTCGGAAATGGCCATAACTAATGATGGAACTAGAATCTTAAGCATATACGAAGATAGCTCGATAGC AGTGATTGACAGGGAAAAGAAAAAAATTTTGAGACTGCTTCCGCAAGAGGGTGTGATTACTTCCTTCTCATTATCGAATGACAACAAAGTCCTTCTCGTT AATCTGCTAAACCGAGGAATCCATTTTTGGAGTCTTCTAGAAGGTTATGAGGGCCTCATCAGCAGATATGAAGGTCGGATAAGCACACGATTTATCATCA GATCTTGTCTTGGTGGATTAGAAGAAACATTTATAGCGAGTGGGAGTGAGGATTCTCGGGTGTTCATATGGCATAGAGGCCAAAGGATTCCAATCATGCA ACTGCAATCAATTCATACAGGAACTGTGAACTGCGTGAGCTGGAACCCAACAAATATTCACATGCTGGCTTCTGCTAGTGATGATCATAAAATTGTTATA TGGGGTCCTCCATCCTAG
AA sequence Show only first row Show all	>Potri.010G254300.1 pacid=42796806 polypeptide=Potri.010G254300.1.p locus=Potri.010G254300 ID=Potri.010G254300.1.v4.1 annot-version=v4.1 MAQLVETVGSKGVVKRTEFVRIITRALHSLGYEEIGTLLENQSGIPLQSQEISSFKNQVLAGNWDQSVETLHAISLLDKSTLTSQASFLIWEQQFLEFLR DDHILDSLNTLRKKIAPLDINSNRVQELASCTISPPEDLNIESRPEILEKLHNFLPPSLMIHPTRLESIIEEAISLRRLSCLYHNISDRNVSLYSDHKCG MSRLPCQAKQILSMHVDEVWFLQFSHNGKYLASSSKDESAIIWEVTDGGEVLFGHILGHEKPVLTVSWSPDDDQLLTCGEGEVIKRWEANSGRLLHVYER TDFGFISCAWCPVGFILAGTTDQSIILLDLEGAELDSWKDYALRMSEMAITNDGTRILSIYEDSSIAVIDREKKKILRLLPQEGVITSFSLSNDNKVLLV NLLNRGIHFWSLLEGYEGLISRYEGRISTRFIIRSCLGGLEETFIASGSEDSRVFIWHRGQRIPIMQLQSIHTGTVNCVSWNPTNIHMLASASDDHKIVI WGPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08560			transducin family protein / WD...		Potri.010G254300 [exp]	0	1
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.001G473200 [exp]	5.83	0.8698
AT5G26594		ARR24	response regulator 24 (.1)		Potri.003G172932 [exp]	10.53	0.8591
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184600 [exp]	12.24	0.8549
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024300 [exp]	14.96	0.7658
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	16.79	0.8533
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	16.97	0.8550
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183500 [exp]	18.97	0.8405
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G109765 [exp]	20.12	0.8028
AT5G42720			Glycosyl hydrolase family 17 p...		Potri.014G183000 [exp]	23.68	0.8364
AT2G43890			Pectin lyase-like superfamily ...		Potri.017G006700 [exp]	24.59	0.7662

Compare expression of checked genes

Potri.010G254300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.