Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54540 1049 / 0 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G64550 441 / 2e-145 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G60790 423 / 8e-140 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT5G64840 214 / 1e-59 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 197 / 9e-54 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G28390 75 / 1e-13 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28345 74 / 4e-13 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT2G36910 73 / 7e-13 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G70610 71 / 2e-12 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G28860 69 / 1e-11 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003300 [exp] 1216 / 0 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 441 / 3e-145 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.004G214300 [exp] 431 / 9e-143 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 424 / 7e-140 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.007G080600 [exp] 212 / 6e-59 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 202 / 2e-55 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.016G093600 [exp] 72 / 2e-12 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 71 / 3e-12 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.015G059600 [exp] 69 / 7e-12 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029363 [exp] 1065 / 0 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10016184 [exp] 1063 / 0 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10028810 [exp] 428 / 2e-141 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 431 / 4e-141 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10038681 [exp] 427 / 4e-141 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10023043 [exp] 432 / 9e-135 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10037947 [exp] 405 / 2e-131 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10006804 [exp] 220 / 8e-62 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 219 / 2e-61 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 173 / 3e-51 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.010G254400.1 pacid=42797348 polypeptide=Potri.010G254400.1.p locus=Potri.010G254400 ID=Potri.010G254400.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGCAAAAGGAGGATGCTAGTGGCGCACCCTCAAAGGCTAAGGCTGGCAATAAAGATGCAAAGAAGGAAAAACTATCAGTCACTGCTATGT TGGCTAGCATGGACCAGAAACATGACAAACCTAAGAAAGGTTCTTCGTCAACCGTAACGTCTAGCAAGCCCAAGCCAAAGTCAGCTCCTTCTTACACCGA TGGAATTGATCTTCCTCCGTCTGATGATGAAGAGCCGAATGGCTTGGAAGAAGAGCAACAGCAGAATGATCCAAACAAGAGACCCAGTCAGCGGAGGTCT GAATTGAAGCCCCTTGATGTAGCCATATCGGATAAAGAATTAAAAAAACGTGAAAAGAAGGAAGTTCTTGCTGCCCATGCCATTGAGCATGCGAGGCAGG AGGCCCTTAAAGATGACCATGATGCTTTCACGGTCGTCATTGGAAGCCGGGCTTCTGTCCTTGATGGGGAAGATGAAGGTGATGCAAATGTCAAAGATAT AACAATAGAGAATTTTTCTGTCTCAGCTCGGGGGAAAGAACTGCTTAAAAATGCATCTGTGAAGATAGCACATGGACGGAGATATGGTTTGGTTGGGCCC AATGGAATGGGCAAGTCTACACTATTGAAGCTCCTTGCTTGGAGAAAGATTCCCGTGCCAAAGAATATTGATGTGCTTTTGGTTGAACAGGAGGTCATTG GTGATGATAAAACAGCTTTACAAGCAGTTGTTTCAGCTAATGAAGAACTTGTCAAACTCCGAGAAGAAGTTGCCTCCCTGCAGAAATCTGACGGCCCTGC TGAGGGTGAAAACAATGGTGATGATTATGATGAAGATGATGCTGGAGAGAGGCTTGCTGAATTGTATGAAAAATTGCAGTTGATGGGATCAGATGCTGCT GAATCACAGGCATCAAAGATTCTTGCTGGGTTGGGTTTCACCAAGGATATGCAGGGCCGTCCAACTAGGTCTTTTAGTGGTGGCTGGAGGATGAGAATTT CACTGGCAAGGGCACTTTTTGTGCAGCCTACTCTTTTATTGCTTGATGAGCCTACCAACCATCTTGACTTGAGGGCTGTTCTCTGGTTGGAGGAGTATCT GTGCCGGTGGAAGAAAACTTTGGTTGTTGTCTCACATGACCGAGATTTCCTCAACACAGTTTGCAATGACATCATTCATCTACATGATCAGAAACTTGAC TCCTATCGTGGAAATTTTGATGACTTTGAAGTTGGGTATGAGCAGAGGCGGAAGGAGACAAACAAGAAGTTTGAGATTTATGACAAGCAGATGAAAGCTG CCAAGAGGAGTGGGAATCGGGTTCAGCAGGAAAAGGTCAAGGATCGAGCAAAGTTTGCTGCAGCCAAGGAAGCAGGAAAGAATAAGGGCAAGGCTAAGGT TGATGAGGATCAAGCCCCACCCGAAGCTCCAAGGAAGTGGAGAGATTACAGCGTTGAGTTCCACTTTCCTGAACCTACTGAGCTTACACCACCACTCTTG CAGCTCATTGAAGTGAGCTTTAGTTATCCAAATCGGGAGGATTTCAAGTTGTCAAATGTTGATGTGGGCATTGACATGGGGACCCGTGTTGCTATTGTTG GACCCAATGGAGCTGGCAAATCCACTCTCCTAAATCTTCTTGCAGGTGATTTGGTACCAACCGAAGGTGAAGTGAGGCGGAGTCAGAAGTTGAGGATTGG AAGGTACTCGCAGCACTTTGTGGATCTTCTTACAATGGATGAAACACCTGTACAATACCTTCTTCGTCTCCATCCAGACCAAGAGGGGCTTAGCAAACAG GAGGCTGTTCGGGGGAAGCTTGGCAAATTTGGACTTCCCAGTCATAATCATCTTACCCCTATTGCAAAATTATCAGGTGGGCAGAAAGCCCGAGTTGTCT TCACATCAATATCAATGTCAAAGCCCCATATTCTACTTTTGGACGAACCCACAAACCACTTGGATATGCAAAGTATTGATGCCTTGGCTGATGCGCTTGA TGAATTCACTGGTGGGGTAGTCCTGGTCAGTCACGACTCTAGATTGATATCACGTGTCTGTGAGGATGAAGAGAAGAGTGAAATTTGGGTGGTGGAAGAT GGAACTGTGACTGCTTTTCCGGGGACATTTGAAGAGTACAAAGAGGAGCTACAAAAAGAAATTAAGGCTGAGGTTGATGATTAA
AA sequence Show only first row Show all	>Potri.010G254400.1 pacid=42797348 polypeptide=Potri.010G254400.1.p locus=Potri.010G254400 ID=Potri.010G254400.1.v4.1 annot-version=v4.1 MGKKQKEDASGAPSKAKAGNKDAKKEKLSVTAMLASMDQKHDKPKKGSSSTVTSSKPKPKSAPSYTDGIDLPPSDDEEPNGLEEEQQQNDPNKRPSQRRS ELKPLDVAISDKELKKREKKEVLAAHAIEHARQEALKDDHDAFTVVIGSRASVLDGEDEGDANVKDITIENFSVSARGKELLKNASVKIAHGRRYGLVGP NGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDKTALQAVVSANEELVKLREEVASLQKSDGPAEGENNGDDYDEDDAGERLAELYEKLQLMGSDAA ESQASKILAGLGFTKDMQGRPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNDIIHLHDQKLD SYRGNFDDFEVGYEQRRKETNKKFEIYDKQMKAAKRSGNRVQQEKVKDRAKFAAAKEAGKNKGKAKVDEDQAPPEAPRKWRDYSVEFHFPEPTELTPPLL QLIEVSFSYPNREDFKLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQ EAVRGKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVED GTVTAFPGTFEEYKEELQKEIKAEVDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	0	1
AT1G26580			unknown protein		Potri.008G094400 [exp]	5.00	0.6303
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	13.26	0.7140	Pt-FTSH4.1
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.006G025600 [exp]	14.14	0.7073
AT1G43690			ubiquitin interaction motif-co...		Potri.005G191300 [exp]	14.38	0.6600
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Potri.001G344900 [exp]	21.00	0.7004
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.001G356100 [exp]	47.71	0.6055	Pt-ERF3.1,ERF40
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	74.69	0.6078
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.012G017600 [exp]	74.75	0.6362	BIP.3
					Potri.019G106950 [exp]	75.65	0.5889
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	80.92	0.6087	EMB78.2

Compare expression of checked genes

Potri.010G254400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.