Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23395 161 / 2e-51 MIA40 mitochondrial intermembrane space assembly machinery 40, Cox19-like CHCH family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001795 [exp] 134 / 2e-40 AT5G23395 132 / 3e-39 mitochondrial intermembrane space assembly machinery 40, Cox19-like CHCH family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G254600.1 pacid=42798936 polypeptide=Potri.010G254600.1.p locus=Potri.010G254600 ID=Potri.010G254600.1.v4.1 annot-version=v4.1 ATGGGTCAAGCTCAAAGCGAGGTGGCACCAAGCGATACAGCAGATCAAATGGAACCCCATTTTTCTTCATCTCCTTCGATGGAATCTCTTCTTGCTGAAG CTGTAGCATATGGAAATGATGAGAATGAGTCTCTTGAAGCTAAGGCTCAGAAAGCATTAGAATGCCCATGTATAGCTGATTTACGCAACGGCCCATGTGG AGTTCAGTTTTCAGAATCATTCTTGTGTTTTCTCAAAAGTACTTCAGAGGAAAAGGGCTCGGATTGTGTGCATCCATTTGTGGCTTTGCAGAATTGCATC AAAGCTAACCCCAACGCTTTTTCTAAGGACATTTTAGAAGAAGCTGAAGAGAAGAAAGAGGAGGAGCCAGCACAGGAATACAAAATTATTCCTCCCATAT GGTCTAGAGAATCTCAGAGTCCGAAGTCCAAGCTTTAG
AA sequence Show only first row Show all	>Potri.010G254600.1 pacid=42798936 polypeptide=Potri.010G254600.1.p locus=Potri.010G254600 ID=Potri.010G254600.1.v4.1 annot-version=v4.1 MGQAQSEVAPSDTADQMEPHFSSSPSMESLLAEAVAYGNDENESLEAKAQKALECPCIADLRNGPCGVQFSESFLCFLKSTSEEKGSDCVHPFVALQNCI KANPNAFSKDILEEAEEKKEEEPAQEYKIIPPIWSRESQSPKSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23395		MIA40	mitochondrial intermembrane sp...		Potri.010G254600 [exp]	0	1
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	3.74	0.7461
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	10.95	0.7146	Pt-SDH1.1
AT5G46020			unknown protein		Potri.011G060800 [exp]	12.44	0.7002
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	12.76	0.7634
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.003G125800 [exp]	18.02	0.6078	ATGSTT1.2
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	21.00	0.6885	SDH2.1
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Potri.014G049900 [exp]	23.30	0.7461
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Potri.001G424600 [exp]	29.39	0.6293
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.008G165700 [exp]	34.92	0.6107
AT5G51120		PABN1, ATPABN1	polyadenylate-binding protein ...		Potri.015G110800 [exp]	37.52	0.6559

Compare expression of checked genes

Potri.010G254600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.