Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08380 667 / 0 ATAGAL1 alpha-galactosidase 1 (.1) AT5G08370 520 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT3G56310 469 / 2e-164 Melibiase family protein (.1.2) AT3G26380 84 / 3e-17 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 546 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 538 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.004G038100 [exp] 498 / 4e-176 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 465 / 7e-163 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 85 / 1e-17 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 82 / 2e-16 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 81 / 3e-16 AT3G26380 772 / 0.0 Melibiase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010160 [exp] 575 / 0 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10024401 [exp] 529 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 518 / 0 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 507 / 1e-179 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 490 / 3e-173 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10017365 [exp] 491 / 4e-173 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1) Lus10018260 [exp] 489 / 1e-172 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 466 / 3e-163 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10038305 [exp] 459 / 4e-161 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10034218 [exp] 460 / 3e-160 AT3G56310 646 / 0.0 Melibiase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF16499 [poplar] [flax] Melibiase_2 Alpha galactosidase A
Representative CDS sequence Show only first row Show all	>Potri.010G255200.5 pacid=42799884 polypeptide=Potri.010G255200.5.p locus=Potri.010G255200 ID=Potri.010G255200.5.v4.1 annot-version=v4.1 ATGATGGAGAACTGTGCTAATGGTAGTAGTAACTGTTTACTAGCAGTGTGTCTCCTGTTACTCATCTCCTCTTCTCCATCATCATCCATCAGGGGTAGCC CCGGCGTAACCAGTGTTGATTCGGTTTCAAGAGTAGAAAAAAACAGACTTCCGTCGAACTGGGATAGTAGTAGAAGAAATCTGCTTGCAAATGGTCTTGC CGACACTCCTCCCATGGGATGGAATAGTTGGAATCACTTCAATTGCAAAATTGATGAGAAAATTATCAAAGCGACTGCTGATTTCCTGGTTTCCACCGGC CTGTCTAAACTTGGCTACACATATGTTAACATTGACGATTGTTGGGCTGAAATGGCTCGTGATGGCAAGGGTAATCTAGTGCCTAAGAAATCAACATTTC CTTCTGGTATTAAAGCCCTGGCAGACTATGTTCACAGCAAAGGTCTTAAATTAGGAATCTACTCAGATGCAGGGTATTTTACTTGCAGCAAAACCATGCC TGGCTCACTTGGTCATGAGGAACAAGATGCCAAGAGTTTTGCTTCATGGGGTATTGACTATTTGAAATACGATAACTGTAACAATGATGGTACAAAGCCA ACCGTTAGGTACCCTGTAATGACCCGCGCTTTGATGAAAACTGGCCACCCTATATTTTTCTCACTTTGTGAATGGGGAGACATGCATCCTGCAACGTGGG GTGCTAAGGTAGGAAATAGCTGGAGGACAACTAATGATATTTCTGATACATGGGACAGTATGGTTTCAAGAGCAGACATGAATGAGGTCTATGCAGAGCT TGCAAGGCCTGGTGGTTGGAATGATCCTGACATGCTTGAGGTGGGGAATGGAGGGATGACAAAAGATGAGTACACATTGCACTTCAGTATTTGGGCCATT TCAAAGGCTCCCCTTCTTCTTGGTTGTGATGTGAGGAACATGACGAAAGAGACAATGGATATCATTGCCAATAAGGAGGTTATTGCTGTTAATCAAGATC CACTTGGGGTACAAGCTAAGAAGGTTAGGATGGAAGGTGATCTTGAGATCTGGGCAGGGCCTCTCGCGGGCTATAGGGTAGCTGTTCTACTAGTCAACCG AGGCCCCTGGCGTAATTCTATTTCCGCCCAGTGGGATGACATTGGAATTCCTCTCAACAGTATCGTCAAAGCAAGAGATCTCTGGGAGCACAAGACCTTG AAAACTCATTTTGTAGGGAACCTGACAGCCACCATGGATTCTCATGCATGCAAGATGTACATCTTGAAGCCCATTTCATAG
AA sequence Show only first row Show all	>Potri.010G255200.5 pacid=42799884 polypeptide=Potri.010G255200.5.p locus=Potri.010G255200 ID=Potri.010G255200.5.v4.1 annot-version=v4.1 MMENCANGSSNCLLAVCLLLLISSSPSSSIRGSPGVTSVDSVSRVEKNRLPSNWDSSRRNLLANGLADTPPMGWNSWNHFNCKIDEKIIKATADFLVSTG LSKLGYTYVNIDDCWAEMARDGKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKSFASWGIDYLKYDNCNNDGTKP TVRYPVMTRALMKTGHPIFFSLCEWGDMHPATWGAKVGNSWRTTNDISDTWDSMVSRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYTLHFSIWAI SKAPLLLGCDVRNMTKETMDIIANKEVIAVNQDPLGVQAKKVRMEGDLEIWAGPLAGYRVAVLLVNRGPWRNSISAQWDDIGIPLNSIVKARDLWEHKTL KTHFVGNLTATMDSHACKMYILKPIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	0	1
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	3.00	0.7910	SDG943
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	3.00	0.8078
AT5G28060			Ribosomal protein S24e family ...		Potri.005G049400 [exp]	3.46	0.7937	Pt-RPS24.1
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	3.74	0.7404
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Potri.002G261900 [exp]	8.00	0.7679
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	8.36	0.7724
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	9.48	0.7575
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	12.48	0.7734
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Potri.006G223500 [exp]	12.48	0.7434
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	13.41	0.7394	CCRL2,CCR.9

Compare expression of checked genes

Potri.010G255200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.