Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08400 438 / 4e-156 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) AT4G29400 192 / 2e-59 Protein of unknown function (DUF3531) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148300 [exp] 181 / 2e-55 AT4G29400 337 / 1e-116 Protein of unknown function (DUF3531) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009625 [exp] 410 / 2e-145 AT5G08400 409 / 6e-145 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) Lus10032701 [exp] 178 / 6e-54 AT4G29400 307 / 1e-104 Protein of unknown function (DUF3531) (.1) Lus10008997 [exp] 111 / 8e-31 AT5G08400 111 / 3e-31 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) Lus10012917 [exp] 44 / 9e-06 AT4G29400 91 / 1e-23 Protein of unknown function (DUF3531) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12049 [poplar] [flax] DUF3531 Protein of unknown function (DUF3531)
Representative CDS sequence Show only first row Show all	>Potri.010G255300.1 pacid=42800064 polypeptide=Potri.010G255300.1.p locus=Potri.010G255300 ID=Potri.010G255300.1.v4.1 annot-version=v4.1 ATGCCCGTGTCTTTGTTGCAGATGCCGGGTATGGGTTTGGGTCTGGGATTGGGTTTGAGGTGGGGATGGGGATCGCGCCCACGTAACATTAACAACAATT GCGATACAACTACCACTATAAAGAAGAAGAAGCTACTGGTTGTCGCTTCTTCGGATGATGGAATTGGAGAAAAGAAGACAAAAAGAGATGATAACGGCGG CTCTTTGGTGCTCTCCGGAACCACAGCGAGAGGACGAAGATTGCTCAAAGTTCGTGAAGATAAAAGGAAACGCGAATACGATCGCCTTCACAACTATCCT GCATGGGCCAAAGTTCTTGAAGATGCTTGCAAAAGTGACGAGGAACTCCGTGCCCTTCTTGGTGACAGCATAGGCAACCCGGAACTGATGAGGCAAAGAG TGGAAGACAGAGTGAGGAAGAAAGGCCGCAGTAACTTCCACAAGTCTAAAACGGGTTCTGTAGTTTCCTTCAAAGTCAGCTTCCGAGACTTCAACCCTAT TGATTCCTACATTTGGTTTGAGTTTTACGGCTCTCCTTCTGATCAGGATGTTGATATTATTGGCACTGTCATTCAATCTTGGTATCTAATGGGACGTTTG GGTGCTTTCAATTCTTCCAATTTGCAGTTGGCAAATTCATCAATGGAGTATGATCCACTCTATGATGCAGATAAGGGCTTCAAAGTGATGCCATCATCAT TTCATGATATCAGTGATGTTGAGTTTCAGGATAACTGGGGCCGTGTTTGGGTAGATCTTGGTACGTCAGATTTTTTTGCCATCGACGTGCTCCTCAACTG CTTAACTGTATTGAGTTCAGAATATTTAGGTATTCAACAAGTAGTTTTTGGGGGTCGCCGAATAGGCGATTGGGAAGAAGGGATGACAAACCCAGAATAT GGATACAAGTACTTCAAAGTCTAA
AA sequence Show only first row Show all	>Potri.010G255300.1 pacid=42800064 polypeptide=Potri.010G255300.1.p locus=Potri.010G255300 ID=Potri.010G255300.1.v4.1 annot-version=v4.1 MPVSLLQMPGMGLGLGLGLRWGWGSRPRNINNNCDTTTTIKKKKLLVVASSDDGIGEKKTKRDDNGGSLVLSGTTARGRRLLKVREDKRKREYDRLHNYP AWAKVLEDACKSDEELRALLGDSIGNPELMRQRVEDRVRKKGRSNFHKSKTGSVVSFKVSFRDFNPIDSYIWFEFYGSPSDQDVDIIGTVIQSWYLMGRL GAFNSSNLQLANSSMEYDPLYDADKGFKVMPSSFHDISDVEFQDNWGRVWVDLGTSDFFAIDVLLNCLTVLSSEYLGIQQVVFGGRRIGDWEEGMTNPEY GYKYFKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08400			Protein of unknown function (D...		Potri.010G255300 [exp]	0	1
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.005G231400 [exp]	2.23	0.9490
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Potri.005G089600 [exp]	3.46	0.9350
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	4.47	0.9389	Pt-GSA1.1
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	9.21	0.9193
AT2G20725			CAAX amino terminal protease f...		Potri.019G101100 [exp]	11.00	0.9256
AT1G73470			unknown protein		Potri.015G033200 [exp]	11.13	0.9010
AT3G59980			Nucleic acid-binding, OB-fold-...		Potri.017G000200 [exp]	11.40	0.9270
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	11.66	0.9298
					Potri.005G027500 [exp]	12.24	0.9140
AT2G44640			unknown protein		Potri.014G044200 [exp]	12.68	0.9167

Compare expression of checked genes

Potri.010G255300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.