Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08410 78 / 4e-18 FTRA2 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) AT5G23440 78 / 4e-18 FTRA1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002200 [exp] 148 / 8e-46 AT5G08410 103 / 3e-28 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013448 [exp] 89 / 8e-23 AT5G08410 130 / 5e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) Lus10041002 [exp] 89 / 1e-22 AT5G08410 130 / 8e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0610 [poplar] [flax] ETAP PF02941 [poplar] [flax] FeThRed_A Ferredoxin thioredoxin reductase variable alpha chain
Representative CDS sequence Show only first row Show all	>Potri.010G255500.1 pacid=42799296 polypeptide=Potri.010G255500.1.p locus=Potri.010G255500 ID=Potri.010G255500.1.v4.1 annot-version=v4.1 ATGGGCACGAGTGGGGCGTTATCGTCGGGAGCCGCCGCAGCCTGTTCGGCTTTCCGTTGCACAGATATCACCAAATTCAAATTCAAATTCAAATCCAATG CCTTATTTTCACCAAATCCAAGGCGTAACTGCTGCTGCTACTCAATTATTACTCCTACTTGCACTGCCACAGTAGCATCTACATCTTCATCTTCCTCTAC AGCAGCAGCAAGTAGTACTTGTAGCAGAGGAAGAAGAAAAACACTAGTTTCATGCTCGGTGGCTTTACGGTCCAACAATTCCGCAACCATGGTGACAGAA GATGAGGAAGAGGAAGCGAAGAAGAAGATTGGAGCGAAGGTTAGGGTGAAGGTTCCGGTGAAGGTTTACCACGTGCCTCGAGTGGCGGAGGAATTGGATC TGTGTGGATTGGAAGGTGAGGTGAAGCAGTACGTGAACCTGTGGAAGGGGAGGCGAGTTTCAGCTAATCTTCCTTACAAGATTCAGTTTGTCCATTCAGG AGGAGTCAAGTTCTTTGCTCATCTCAGAGAGGATGAGTTGGAATTCCTTGATTGA
AA sequence Show only first row Show all	>Potri.010G255500.1 pacid=42799296 polypeptide=Potri.010G255500.1.p locus=Potri.010G255500 ID=Potri.010G255500.1.v4.1 annot-version=v4.1 MGTSGALSSGAAAACSAFRCTDITKFKFKFKSNALFSPNPRRNCCCYSIITPTCTATVASTSSSSSTAAASSTCSRGRRKTLVSCSVALRSNNSATMVTE DEEEEAKKKIGAKVRVKVPVKVYHVPRVAEELDLCGLEGEVKQYVNLWKGRRVSANLPYKIQFVHSGGVKFFAHLREDELEFLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	0	1
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	1.00	0.9889
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	1.41	0.9884	Lhca6,Pt-LHCA2*1.1
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	3.16	0.9812
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	6.32	0.9720	Pt-PSAL.3
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	6.48	0.9739
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	6.48	0.9839
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	6.48	0.9796
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.008G173800 [exp]	7.93	0.9718	3,Pt-AMT1.5
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.004G014850 [exp]	8.83	0.9804
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	8.94	0.9790	PSAD1.1

Compare expression of checked genes

Potri.010G255500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.