Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23450 1012 / 0 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT4G21540 80 / 2e-15 SPHK1 sphingosine kinase 1 (.1.2.3) AT4G21534 68 / 1e-11 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1) AT5G51290 48 / 3e-05 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002100 [exp] 1315 / 0 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.011G043500 [exp] 67 / 2e-11 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3) Potri.004G233300 [exp] 54 / 3e-07 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017366 [exp] 1077 / 0 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10010161 [exp] 1029 / 0 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10011246 [exp] 66 / 5e-11 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10027086 [exp] 61 / 4e-09 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018439 [exp] 60 / 5e-09 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10016714 [exp] 52 / 2e-06 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00781 [poplar] [flax] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G255600.8 pacid=42799298 polypeptide=Potri.010G255600.8.p locus=Potri.010G255600 ID=Potri.010G255600.8.v4.1 annot-version=v4.1 ATGCCGTTTATTGTTGTCAAAATTGGATTGTTACCACCACCACCACCGTATCGCTTCCAGCTCATAGACATGCACCAGGGTAAGAGTGGGAGTTTTGTGT CCAGGAATAATCCGGGTATTAATTCCAACGCTACTACTGCTCCTGCTAACAACACTAATAAATCTCAGAGGAGATTGAGCTTGTGCTCTCAAATAGCCAC GCACTCTTCCCCAATTGTTTTCCCTGAGAAACAGAAACGCAGCAAGAAGCTCAAGGCTGCCTCTTCCAATTCCAGGAGTAGTACTGAGGCCGTTGCTGAT GACCCGTTTCCATTCAACCAACCCAAGATTGATGAGCACAGAATAGACATAGGTGGAGGAGCAGCTGCAGGAGGAGATGAAAACTCCGATTTGTTAGGCT ATGCTGTCTTATCTGGGAAACTCATTTTGGATAAAAGAAACACCTCTTCCTCTTCCTCCTATCATACCAGTACTACGAAAGATCAAGCTGACGTCACCAA CCAACAAGCAGTTGATGCTAAGCTTACAAGCAAAGCTTTAGTTTGGGGTTCTCATATGCTCCATCTTGAGCATGTCATCTCGGTATCATACAATGTTGGT CTCAGACATTTTACAGTGCATTCTTATCCCATAAAAAAGAGCTCTTGTGGGCTGTCTTGCTTTATGAAGCCTAAAAGAACTCGCAGAGACTACCGTTTCT TGGCTGCTAGCGTGGAAGAGGCCCTTCAATGGGTTGGTGGATTTGCTGATCAGCAATGCTTTATTAATTGTTTGCCCCATCCCTTGGCTTCATCGAAGAA GCAAGCTTCTTCTGAGTTACTTCCCACTGACCCCCCGCCTGAACTGCTCTTCAAGTGCAAGAGCCCTCCCAAAATGCTGGTCATATTAAATCCACGCTCG GGGCGCGGTCGTTCAACTAAAGTTTTCCATGGAATTGTGGAACCAATATTTAAGCTAGCGGGGTTCAAATTGGAGGTAGTCAAAACAACGTCTGCTGGCC ATGCTAAAAAGCTTGCTTCAACTGTTGATATCAGCACTTGTCCTGATGGAATTATATGCGTTGGTGGTGATGGAATAATTAATGAGGTTCTAAATGGTCT GCTTATTAGGGATAACCAGAAAGAAGGAATTTCGATACCAATTGGAATTATACCTGCTGGTTCAGATAATTCACTTATTTGGACTGTTCTAGGGGTTAGA GATCCAATTTCGGCTGCCATATCTATTGTGAAGGGGGGTCTCACTGCTACAGATGTTTTTGCTGTCGAGTGGATACAGTCTGGTGTTATACACTTTGGAA TGACAGTCTCATATTATGGCTTTGTCAGTGATGTGTTGGAACTTTCTGAGAAATATCAGAAACGCTTTGGTCCATTGCGATATTTTGTTGCTGGATTTCT CAAGTTCTTATGCTTGCCAAAGTACAGCTATGAAGTGGAATATCTTCCTGCATCAAGAGAGGACAGGGATGGAAAACAGTCAGCTGAGAGAGACATAGTT GACATGTCAGACTTGTACACTGATGTGATGAGGAGATCTAACAAAGATGGCATACCCAGAGCCTCTAGTTTATCAAGTATCGACTCAATAATGACTCCAA GTCGAATGTCTGGAGGGGACTTGGATACAACCTGCAGTAGCACTCGTGCTAGCACTGAACCATCTGAGTATGTGCGTGGCTTAGATCCAAAAGCAAAACG CCTGTCATCAGGGAGGACAAATGTTATGGCAGAGCCAGAAGTTATTCATCCACAATTACCACTGTCAACAACTCCAAACTGGCCAAGGACTAGGTCAAAG TCGAGGGCCGATAAAGGATGGACAGGATTGACTGCTACACATGATCCTTCTCGATGTTCCTGGGGAAATGCCGCACCAAATGATAGAGAGGATATATCTT CAACATTATCTGATCCTGGTCCAATTTGGGATGCTGAACCAAAGTGGGATACTGAACCTAATTGGGATGTTGAAAATCCTATTGAATTGCCAGGGCCATC AGATGATATAGAAGCAGGAATGAAAAAGGAAGTCATTCCTAGGTTTGAGGATAAATGGGAATTTAGAAAGGGACAATTTCTTGGTATCATGGTTTGCAAT CATGCTTGCAGAACTGTTCAGAGTTCTCAGGTGGTAGCACCGAGGGCTGAGCATGATGACAACACCATGGATATGCTCTTGGTTCATGGTAGTGGGCGAC TGAGGCTACTGAGATTTTTCTTGCTATTGCAGATGGGTCGACATCTTTCTCTCCCATATGTTGAATATATTAAGGTAAAATCTGTGAAGATAAAAGCGGG GAAGCACACACACAATGGTTGTGGAATTGATGGTGAGCTCTTTCAACTTAATGGGCAGGTAATATCTTCTTTGCTGCCAGAGCAGTGCAGACTCATTGGC CGGTCCCCAAACCATCCCATGTAA
AA sequence Show only first row Show all	>Potri.010G255600.8 pacid=42799298 polypeptide=Potri.010G255600.8.p locus=Potri.010G255600 ID=Potri.010G255600.8.v4.1 annot-version=v4.1 MPFIVVKIGLLPPPPPYRFQLIDMHQGKSGSFVSRNNPGINSNATTAPANNTNKSQRRLSLCSQIATHSSPIVFPEKQKRSKKLKAASSNSRSSTEAVAD DPFPFNQPKIDEHRIDIGGGAAAGGDENSDLLGYAVLSGKLILDKRNTSSSSSYHTSTTKDQADVTNQQAVDAKLTSKALVWGSHMLHLEHVISVSYNVG LRHFTVHSYPIKKSSCGLSCFMKPKRTRRDYRFLAASVEEALQWVGGFADQQCFINCLPHPLASSKKQASSELLPTDPPPELLFKCKSPPKMLVILNPRS GRGRSTKVFHGIVEPIFKLAGFKLEVVKTTSAGHAKKLASTVDISTCPDGIICVGGDGIINEVLNGLLIRDNQKEGISIPIGIIPAGSDNSLIWTVLGVR DPISAAISIVKGGLTATDVFAVEWIQSGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASREDRDGKQSAERDIV DMSDLYTDVMRRSNKDGIPRASSLSSIDSIMTPSRMSGGDLDTTCSSTRASTEPSEYVRGLDPKAKRLSSGRTNVMAEPEVIHPQLPLSTTPNWPRTRSK SRADKGWTGLTATHDPSRCSWGNAAPNDREDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDIEAGMKKEVIPRFEDKWEFRKGQFLGIMVCN HACRTVQSSQVVAPRAEHDDNTMDMLLVHGSGRLRLLRFFLLLQMGRHLSLPYVEYIKVKSVKIKAGKHTHNGCGIDGELFQLNGQVISSLLPEQCRLIG RSPNHPM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	1.41	0.7862	POR.1,TFCFC
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	2.82	0.7367
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	2.82	0.7463
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	3.87	0.7372
AT3G14067			Subtilase family protein (.1)		Potri.003G067000 [exp]	6.92	0.6953
AT2G22640		ATBRK1, BRK1, H...	BRICK1, putative (.1)		Potri.014G010000 [exp]	7.74	0.6956
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	10.00	0.6661
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	13.03	0.6524
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	16.91	0.6661
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.010G147400 [exp]	19.79	0.7202

Compare expression of checked genes

Potri.010G255600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.