Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61850 1796 / 0 phospholipases;galactolipases (.1.2) AT2G30105 64 / 3e-10 unknown protein AT5G07910 60 / 2e-09 Leucine-rich repeat (LRR) family protein (.1) AT4G35470 59 / 2e-08 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT1G33670 57 / 8e-08 Leucine-rich repeat (LRR) family protein (.1) AT1G72180 54 / 6e-07 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 54 / 1e-06 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G17440 53 / 1e-06 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT1G12970 52 / 2e-06 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT1G33590 51 / 4e-06 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018700 [exp] 2273 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Potri.001G280500 [exp] 75 / 1e-13 AT2G30105 503 / 1e-179 unknown protein Potri.001G144100 [exp] 69 / 1e-11 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.015G048800 [exp] 67 / 1e-11 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.007G065000 [exp] 62 / 3e-09 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 61 / 3e-09 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.019G078400 [exp] 57 / 9e-08 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G014405 [exp] 56 / 1e-07 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.005G098600 [exp] 56 / 1e-07 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007661 [exp] 1960 / 0 AT1G61850 1855 / 0.0 phospholipases;galactolipases (.1.2) Lus10018349 [exp] 1887 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Lus10000681 [exp] 67 / 2e-11 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10021635 [exp] 66 / 4e-11 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10031861 [exp] 65 / 2e-10 AT2G30105 437 / 7e-154 unknown protein Lus10016684 [exp] 65 / 5e-10 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10031291 [exp] 63 / 6e-10 AT2G30105 444 / 2e-156 unknown protein Lus10035976 [exp] 62 / 2e-09 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10009476 [exp] 56 / 3e-07 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009340 [exp] 54 / 7e-07 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G000200.1 pacid=42780328 polypeptide=Potri.011G000200.1.p locus=Potri.011G000200 ID=Potri.011G000200.1.v4.1 annot-version=v4.1 ATGTTTAGCTGGAAACGTCCTTCTGAGCTCCTTCGTTTAACTCTAAATTATGGCTCCGAAGATCTCGGCGACGACCTCAACCGCTCCTCCACCTCCTCCT CTTCCACCACCGCATTCACTCCTTCCTCGTCTCCTCTGGCCTATATTTCTACGGAGGCCGCCGCGGAGGAAGAGGACCAGGTAGGCTTTAAAATTGAATT AGATTGGAATGCTGGAGATGATGAAGACCAGGTGGCGTTGAGGTTACAGTCGCAGTTAATGGTTGCGTTGCCTGCGCCTCAGGATTGTGTGATGGTGGAT TTGAAGGCGGCGGAGGAGGACGAGGAGGGGAGAGTGGAGGTGGGGATGAAGGTGGAGAAGAAGAGAGAGGAATTGAGAGGGTTGATATTAGGGAAGAGTG GATCGGGTCAACAGAGTGATGGAGTTGGTGTTTTGACTCGGTTGTTTAGATCTGATGATAGTCGGCATTGGAAGAGTGTGACTTTGCTTAGTCTTGGCGG TTGCGGATTGGCGACATTGCCTGCTGAGATAATTCAGTTGCCAAATCTTGAGAAGCTTTATCTTGAGAACAACAGGCTTTCAGTTTTGCCACCTGAGCTT GGTGAGCTGAAGAGTTTGAAAATTCTTGCAGTTGATTACAACATGCTGGTTACAGTTCCTCTGGAACTGGGGCAGTGCGTTGAACTGGTGGAATTGTCTT TGGAACACAATAAGCTTGTCCAACCTCTTCTTGATTTCAGGTCTATGGCTGAGTTACAAATTCTCAGGCTATTTGGTAATCCTCTGGAATTCCTTCCTGA AATTTTGCCTCTACACAAACTACGACACCTGTCTCTTGCTAATATGAAGATTGAGGCTGATGAAAGTTTGAGATCAGTGAATGTTCAGATAGAGATGGAG AACAGCTCTTATTTTGGTGCATCTAGACACAAGCTTAGTGCCTTCTTTTCTCTCATATTCCGTTTTTCTTCTTGCCATCATCCTTTGCTGGCATCTGCGC TGGCAAAGATAATGCAAGACCAAGGAAACCGTGTTGTTGTTGGGAAAGATCTGAATGCAGTGAAGCAGCTTATAAGTATGATGAGTAGTGACAACTGTCA TGTGGTTAAACAAGCATGCTCTGCTCTATCTGCTCTTGCTGGAGATGTTTCTGTGGCAATGCAGTTGATGAAATGTGACATATTGCAACCCATTGAAACA GTACTCAAATCGGTTGCTCAGGAAGAAGTAATTTCTGTCTTGCAAGTTGTGGCCACCTTGTCCTTTTCATCTGATACTGTATCTCAGAAGATGTTGACAA GGGATATGTTGAGATCATTAAAACTGTTATGTGCTCAAAAAAATCCAGAGGTGCAAAGGTTATCTTTATTAGCTGTTGGAAATTTGGCCTTCTGCTTGGA GAATCGACAGCTTATGGTCACCTCTGGAAGTCTGCAAGACCTTCTGTTGCACCTGACAGCTTCATCTGAACCACGTGTGAATAAAGCAGCAGCTCGTGCT ATGGCAATTCTTGGAGAAAATGAAAATTTAAGGCGTTCCATAAGAGGGAGACCAGTGGCAAAGCAAGGACTGCGCATACTTTCAATGGATGGAGGTGGAA TGAAAGGTCTGGCTACTGTGCAGATTCTTAAAGCAATTGAGAAGGGAACTGGAAAGCGAATACATGAGATATTCGACCTAATATGTGGCACATCAACTGG TGGAATGCTGGCTGTTGCTCTTGGCATGAAGCTAATGACCTTGGATCAATGTGAAGAAATATACAAAAATCTTGGAAAACTCGTCTTTGCTGAACCTGTG CCAAAGGATAATGAAGCTGCAACTTGGAGAGAGAAGTTGGATCAGCTTTACAAAAGTTCATCTCAGAGTTTTAGAGTTGTGGTGCATGGATATAAACACA GTGCAGATCACTTTGAGAGGCTGTTAAAAGAAATGTGTGCTGATGAGGATGGAGATCTGTTAATAGATTCAGCAGTGAAAAATGTTCCCAAAGTATTTGT TGTATCAACTTTGGTTAGTGTGATGCCAGCTCAACCATTTGTGTTCCGCAATTATCAGTATCCTGTTGGAACACTTGAAGTGCCCTTTGCAATTTCAGAA AGTTCAGGAGTTCATGTGCTTGGATCACCTACTACTGGAGGTCAAGTTGGCTATAAACGTAGTGCTTTTATTGGCAGTTGCAAGCATCATGTTTGGCAAG CCATAAGAGCATCATCTGCTGCTCCATACTATCTTGATGATTTCTCAGACGATGTAAACCGCTGGCAAGATGGTGCTATAGTGGCAAACAACCCTACCAT ATTTGCTATAAGAGAAGCACAACTTCTATGGCCTGACACCAGAATTGACTGCTTAGTGTCAATAGGGTGTGGCGCTGTTCCAACAAAGGTCCGGAAAGGT GGTTGGCGTTATCTGGATACCGGCCAAGTGTTGATTGAGAGTGCATGCTCTGTGGATAGAGTGGAGGAAGCTTTAAGTACACTGCTACCCATGCTTCCTG AGATACAATATTTTCGATTTAATCCAGTTGATGAACGCTGTGGTATGGAGCTGGATGAGACTGACCCAGCTATCTGGCTAAAGTTGGAAGCTGCAGTTGA TGAATATGTTCAGAACAATTCTGAAGCCTTCAAGAATGTCTGTGAGAGACTAATTTTTCCCTACCAACATGATGATAAATTGTCAGAGATTATGAAATCT CAGCAATTTTCCAAGGCAAAGTTATCAAATGCAGATGAGACTAGTCCATCTTTAGGTTGGAGGCGTAATGTGCTACTTGTTGAAGCTTTGCACAGTCCTG ATTCGGGAAGGGCTGTGCAACATTCCCGGGCACTAGAGACATTTTGTTCCCGCAATGCAATAATACTATCTCTCATGCATGCCACATCTGGAATTGCTAG GACAGTGCCACCAGGAACATTCTCATCCCCTTTTTCATCACCTCTAATTACTGGAAGCTTCCCCTCAAGCCCGCTTCTATTCAGTCCTGATTTGGGCTCA CAGAGGATTGGCCGTATTGACACGGTCCCACCTTTAAGCTTGGATGGAGTTCAGTCTGGAAAGACAGCTTTATCACCACCAATGTCCCCTTCGAAACACA GACAGCTCTCTTTACCTGTTCGATCATTGCATGAAAAGCTACAGAATTCACCACAAGTGGGGATTATACATTTAGCCCTTCAAAATGACTCATCAGGCTC AATATTAAGCTGGCAGAATGATGTATTTGTTGTTGCTGAACCGGGAGATCTTGCTGATAAGTTTCTTCAGAGTGTTAAATTTAGCTTGTTGTCAATGAAC CGGAGCCGCCATAGGAGGATTACTTCACTGGTTGGCAATATTTCAACTGTTTCTGATTTAGTTCATTGTAAACCATGCTTCCTAGTTGGAAATGTCATCC ATCGTTATATAGGACGACAGACGCAAGTCATGGAGGATGACCAAGAAATAGGGGCATATATGTTCCGTAGAACAGTTCCTTCTATGCACTTGACACCTGA AGATGTTCGCTGGATGGTCGGAGCTTGGAGGGACAGGATTATAATTTGCACAGGAGCATATGGGCCTATGCCAACTTTAATCAAGGCCTTTCTGGATTCT GGTGCAAAAGCTGTAATATGCCCTTCAGTAGAGCCCTTAGAAATCCCGGTGACACTAGTCCATGGATCAGGGGAGTACAATGTTCTGGAAAATGGGAGGT TTGAGATCGGAGAGGAAGAGGCTGAGGAAGAAGAGGCCGAGCCTACCAGTCCAGTGAGTGATTGGGAAGATAGTGACCCCGAGAAGAATGGTGACCATTC GATCGGTTTTTGGGATGATGATGAAGAGGAGCTATCCCAGTTTGTTTGCAAGTTGTATGATTTGTTATTTCGGGTAGGGGCAAGAGTAGATGCTGCTCTT CAAAATGCTCTTGCTTTACACCAGAGGCTAAGGTATTCGTGCCATCTTCCTAGTATACAATAG
AA sequence Show only first row Show all	>Potri.011G000200.1 pacid=42780328 polypeptide=Potri.011G000200.1.p locus=Potri.011G000200 ID=Potri.011G000200.1.v4.1 annot-version=v4.1 MFSWKRPSELLRLTLNYGSEDLGDDLNRSSTSSSSTTAFTPSSSPLAYISTEAAAEEEDQVGFKIELDWNAGDDEDQVALRLQSQLMVALPAPQDCVMVD LKAAEEDEEGRVEVGMKVEKKREELRGLILGKSGSGQQSDGVGVLTRLFRSDDSRHWKSVTLLSLGGCGLATLPAEIIQLPNLEKLYLENNRLSVLPPEL GELKSLKILAVDYNMLVTVPLELGQCVELVELSLEHNKLVQPLLDFRSMAELQILRLFGNPLEFLPEILPLHKLRHLSLANMKIEADESLRSVNVQIEME NSSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQGNRVVVGKDLNAVKQLISMMSSDNCHVVKQACSALSALAGDVSVAMQLMKCDILQPIET VLKSVAQEEVISVLQVVATLSFSSDTVSQKMLTRDMLRSLKLLCAQKNPEVQRLSLLAVGNLAFCLENRQLMVTSGSLQDLLLHLTASSEPRVNKAAARA MAILGENENLRRSIRGRPVAKQGLRILSMDGGGMKGLATVQILKAIEKGTGKRIHEIFDLICGTSTGGMLAVALGMKLMTLDQCEEIYKNLGKLVFAEPV PKDNEAATWREKLDQLYKSSSQSFRVVVHGYKHSADHFERLLKEMCADEDGDLLIDSAVKNVPKVFVVSTLVSVMPAQPFVFRNYQYPVGTLEVPFAISE SSGVHVLGSPTTGGQVGYKRSAFIGSCKHHVWQAIRASSAAPYYLDDFSDDVNRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGAVPTKVRKG GWRYLDTGQVLIESACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCGMELDETDPAIWLKLEAAVDEYVQNNSEAFKNVCERLIFPYQHDDKLSEIMKS QQFSKAKLSNADETSPSLGWRRNVLLVEALHSPDSGRAVQHSRALETFCSRNAIILSLMHATSGIARTVPPGTFSSPFSSPLITGSFPSSPLLFSPDLGS QRIGRIDTVPPLSLDGVQSGKTALSPPMSPSKHRQLSLPVRSLHEKLQNSPQVGIIHLALQNDSSGSILSWQNDVFVVAEPGDLADKFLQSVKFSLLSMN RSRHRRITSLVGNISTVSDLVHCKPCFLVGNVIHRYIGRQTQVMEDDQEIGAYMFRRTVPSMHLTPEDVRWMVGAWRDRIIICTGAYGPMPTLIKAFLDS GAKAVICPSVEPLEIPVTLVHGSGEYNVLENGRFEIGEEEAEEEEAEPTSPVSDWEDSDPEKNGDHSIGFWDDDEEELSQFVCKLYDLLFRVGARVDAAL QNALALHQRLRYSCHLPSIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	0	1
AT4G00590			N-terminal nucleophile aminohy...		Potri.014G080600 [exp]	2.00	0.8912
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	3.16	0.8698
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	6.00	0.8558
AT3G50140			Plant protein of unknown funct...		Potri.010G144200 [exp]	7.07	0.7938
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	7.48	0.8440
					Potri.010G104000 [exp]	7.54	0.8019
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	11.31	0.8268
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.004G178900 [exp]	13.41	0.8361
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	14.83	0.8005
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	15.29	0.7706

Compare expression of checked genes

Potri.011G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.