Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15910 57 / 6e-09 unknown protein AT3G26010 55 / 8e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G07610 54 / 1e-07 F-box family protein (.1) AT3G57590 45 / 6e-05 F-box and associated interaction domains-containing protein (.1) AT2G16810 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT5G49610 44 / 0.0002 F-box family protein (.1) AT4G17780 44 / 0.0003 MYB MYB39, AtMYB39 F-box and associated interaction domains-containing protein (.1) AT1G47300 42 / 0.0005 F-box family protein (.1) AT3G28223 42 / 0.0007 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132400 [exp] 312 / 1e-102 ND / Potri.011G004800 [exp] 207 / 8e-62 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.013G110300 [exp] 63 / 2e-10 AT5G07610 54 / 7e-08 F-box family protein (.1) Potri.010G254000 [exp] 59 / 3e-09 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G109900 [exp] 57 / 9e-09 AT5G07610 61 / 7e-10 F-box family protein (.1) Potri.007G027200 [exp] 57 / 1e-08 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.008G038000 [exp] 57 / 2e-08 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G149000 [exp] 56 / 2e-08 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.008G214000 [exp] 54 / 1e-07 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 100 / 2e-22 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10035796 [exp] 97 / 2e-21 ND 45 / 1e-04 Lus10013987 [exp] 94 / 3e-20 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10028682 [exp] 90 / 5e-19 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10017226 [exp] 87 / 2e-18 ND 44 / 1e-04 Lus10003349 [exp] 87 / 8e-18 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10000860 [exp] 82 / 1e-16 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10016522 [exp] 79 / 4e-15 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10002769 [exp] 73 / 4e-14 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10013986 [exp] 74 / 6e-14 ND 55 / 7e-08
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G000700.1 pacid=42780294 polypeptide=Potri.011G000700.1.p locus=Potri.011G000700 ID=Potri.011G000700.1.v4.1 annot-version=v4.1 ATGGATGGAGAAATAAATACATCAGAATTATCCATAGCGGCAGAAGCAGTAGAAGCAGCAGCAAGAGGAGAAAACGATTTCTCTCTTGTCCATCTGAATG CCGATCTGTTGATCAACATTCTTGTTCGACTTCCACCAGAAAAATCAGTCTTTTGTTCCAAGTTGGTCTCCAAAGGTTGGTGTTCTATACTAGAGAATCC CTATTTTGTTTCCAGGTTTATATCGCACCATATCAATGACAAGCTGAGAAACCATTATTCTTCTTATGCCGCTGCATACCACAAATACCCCCCTTTCTTC TTTATTAGTAGATACAACGATCCAAGGCTTTGTTTTTTCGCAACTGGTGCTGATCAGGAGGAATCCCCCAAGGAATTCACGTTAGAATTTCTTCCACAGG AAAACGACATTAATCTTATTGTTTCTGTAAAGGCTTCCTGCAATGATCTACTCTTCTGCATAGCAAAAAACAGTGATTATGTTATCACTCATTACTATAT CTGCAATCCCTTCACTAGGCAATGGAGTGTCCTCCCTCCTCCTCTCATAAGAACTACAACAAAAAGAATATATTTTGGGTTGGTTTGCCAGCCAAATTAT CAGAGATGGATTCAAGGACAACAATATGAATCTCGTTTTCGGCTAGTACGCTTTATTGAGGTAGAAGAGCACCATGTCGCGGTGGATTTATATTGTTCTG AGACTGGACAATGGAATGAATCTTTTCTGGTAGGCGCCCAGTATGACTTTATCTTTACCAATGTTTTAGCACATGATGGGAAGTTGCATTGGTACAATGG TAGAGATGTTGTTGCTTATGATCCCTTTAATGATGGTCAAACCATTTTCATCGATGGATCCCAATTTAAAGGACGAACCCCATTGCCCGACGTCATTCTT AACAATCCTGACCGCCTCATTTTACGGGTAGTTAATTTCCGCCTTGGGGAATGCCGAGGATTGTTGCGGTTCATGCAGATCATCACTAATTCCTACCGTT CAGATTCTAATGATCATCTGAGTGTTTGGGAGCTCAAGGACAATGAGACTAGAGGATTCAGTTTGGTACACGTGATTTCCTTTGACAATATGTTCTCCAA AGAACCCTGGGTTAGAGATTTTGTAAAGAGCGAGAATAGGGTCAATGCACGGGCACTAGCTTTCCACCCAGAAAATAAGAATGTGGTATACTTGGGCTTC CTTTACCACATCATCTCGTGCAACATCCGAACCGGCGAGTTGGAAGTCATTGATGGGATTCCGTATGAACATAAATTCTGTGCTTTGGAAAATGTCTTCG GAATCAAGCAACCATGGTGGCCAACACCAGTTTCGACGTCCTCGCACCCACTGAATGCCCTTCTCCACTACTTCTGA
AA sequence Show only first row Show all	>Potri.011G000700.1 pacid=42780294 polypeptide=Potri.011G000700.1.p locus=Potri.011G000700 ID=Potri.011G000700.1.v4.1 annot-version=v4.1 MDGEINTSELSIAAEAVEAAARGENDFSLVHLNADLLINILVRLPPEKSVFCSKLVSKGWCSILENPYFVSRFISHHINDKLRNHYSSYAAAYHKYPPFF FISRYNDPRLCFFATGADQEESPKEFTLEFLPQENDINLIVSVKASCNDLLFCIAKNSDYVITHYYICNPFTRQWSVLPPPLIRTTTKRIYFGLVCQPNY QRWIQGQQYESRFRLVRFIEVEEHHVAVDLYCSETGQWNESFLVGAQYDFIFTNVLAHDGKLHWYNGRDVVAYDPFNDGQTIFIDGSQFKGRTPLPDVIL NNPDRLILRVVNFRLGECRGLLRFMQIITNSYRSDSNDHLSVWELKDNETRGFSLVHVISFDNMFSKEPWVRDFVKSENRVNARALAFHPENKNVVYLGF LYHIISCNIRTGELEVIDGIPYEHKFCALENVFGIKQPWWPTPVSTSSHPLNALLHYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15910			unknown protein		Potri.011G000700 [exp]	0	1
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.002G238700 [exp]	12.32	0.5750
AT5G18310			unknown protein		Potri.015G040500 [exp]	21.21	0.5632
AT2G31480			unknown protein		Potri.007G127200 [exp]	28.61	0.5996
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	30.16	0.5918
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	30.70	0.5727
					Potri.006G111850 [exp]	39.89	0.5993
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	50.59	0.5432
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107800 [exp]	79.74	0.5129	Pt-LEA1.4
					Potri.019G089200 [exp]	81.99	0.5321
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	93.53	0.4999

Compare expression of checked genes

Potri.011G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.