Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TOM1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21790 426 / 3e-152 ATTOM1, TOM1 tobamovirus multiplication 1 (.1) AT2G02180 326 / 2e-112 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 297 / 4e-101 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2) AT3G59090 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018100 [exp] 473 / 1e-170 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.008G144400 [exp] 322 / 5e-111 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1) Potri.010G097900 [exp] 322 / 8e-111 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.005G203600 [exp] 42 / 0.0002 AT3G59090 362 / 2e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006770 [exp] 441 / 7e-158 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10020054 [exp] 440 / 1e-157 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1) Lus10007663 [exp] 437 / 2e-156 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1) Lus10018348 [exp] 436 / 2e-156 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [poplar] [flax] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Potri.011G001000.1 pacid=42780363 polypeptide=Potri.011G001000.1.p locus=Potri.011G001000 ID=Potri.011G001000.1.v4.1 annot-version=v4.1 ATGGTCGGCGACTGGTGGCAAGATATCAATGACTCCACTCAATGGCAGGACGGAGTTTTCTACACTCTTTGTGCTGCTTACGCTCTTGTTTCCGCCGTCG CTTTGATTCAATTGATAAGGATTGAATTGAGAGTGCCAGAGTACGGATGGACGACGCAGAAGGTTTTTCATCTCATGAATTTTATCGTTAACGGAGTGCG GGCGGTTGTGTTTGGATTTCATAAGCAAGTATTTATCATGCACCCCAAGGCATTGGTTTTGCTATTATTGGATTTGCCTGGACTTCTCTTCTTCTCTACC TTTACTCTCCTTGTTCTGTTTTGGGCAGAGATATATCATCAGGCCAGAAGTTTGCCGTCGGATAAGCTCAGGGTTTTTTATATTTCAGTCAATGCAGCAA TGTATTTCATTCAGGTTTGCATCTGGGTGTACCTTTGGATAGATGACAACAGCGTAGTGGAATTAATTGGAAAGATATTTATTGCAGTGGTGTCAATCCT AGCTGCATTAAGTTTCTTGGTATATGGGGGAAGATTGTTTTTCATGCTGAAACGCTTCCCTATTGAATCTAAAGGGAGAAGAAAGAAGCTTCATGAGGTT GGATCAGTTACAGCCATATGCTTCACTTGCTTCCTTATCAGATGTTTTGTGGTTCTTCTCTCTGCTTTTGATGCTGATGCCTCACTTGATGTACTGGATC ATCCAGTTTTGAACTTCATCTATTATATGCTTGTCGAGATTCTACCTTCTGCTCTAGTGCTCTACATCCTGCGGAAGTTGCCTCCTAAGAGGATATCAGC TCAATATCACCCAATTTGTTAG
AA sequence Show only first row Show all	>Potri.011G001000.1 pacid=42780363 polypeptide=Potri.011G001000.1.p locus=Potri.011G001000 ID=Potri.011G001000.1.v4.1 annot-version=v4.1 MVGDWWQDINDSTQWQDGVFYTLCAAYALVSAVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHKQVFIMHPKALVLLLLDLPGLLFFST FTLLVLFWAEIYHQARSLPSDKLRVFYISVNAAMYFIQVCIWVYLWIDDNSVVELIGKIFIAVVSILAALSFLVYGGRLFFMLKRFPIESKGRRKKLHEV GSVTAICFTCFLIRCFVVLLSAFDADASLDVLDHPVLNFIYYMLVEILPSALVLYILRKLPPKRISAQYHPIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.011G001000 [exp]	0	1	TOM1.1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.008G167600 [exp]	1.41	0.8207
AT3G45770			Polyketide synthase, enoylredu...		Potri.001G233300 [exp]	2.23	0.7933
AT4G28830			S-adenosyl-L-methionine-depend...		Potri.018G083800 [exp]	3.87	0.8030
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	4.00	0.7844
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	10.39	0.8196
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	10.81	0.7834	LSD1.2
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	11.83	0.7983
AT3G44160			Outer membrane OMP85 family pr...		Potri.009G017100 [exp]	17.88	0.7655
AT4G16360			5'-AMP-activated protein kinas...		Potri.016G006400 [exp]	23.43	0.7147
AT3G59670			unknown protein		Potri.005G144800 [exp]	27.92	0.7700

Compare expression of checked genes

Potri.011G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.