Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21890 350 / 4e-117 unknown protein AT1G70150 140 / 3e-36 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037600 [exp] 142 / 4e-37 AT1G70150 447 / 2e-157 zinc ion binding (.1) Potri.018G009500 [exp] 44 / 0.0005 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G011300 [exp] 43 / 0.0005 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010722 [exp] 144 / 9e-38 AT1G70150 473 / 1e-167 zinc ion binding (.1) Lus10029210 [exp] 131 / 3e-33 AT1G70150 429 / 3e-150 zinc ion binding (.1) Lus10015894 [exp] 43 / 0.001 AT5G65450 216 / 9e-60 ubiquitin-specific protease 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Potri.011G001800.1 pacid=42781873 polypeptide=Potri.011G001800.1.p locus=Potri.011G001800 ID=Potri.011G001800.1.v4.1 annot-version=v4.1 ATGGATTTGCATTTGAAGAATTTGTTTGGTAGATTTCAGGAGCAATTTGGTTCTGGTCCTGGGCTTGGTCCTGGATCAAGTACATGTCTAATGAAGGTAG AGGGAGTTTCTCCTAATTTCATTAAATCTATATATAAAGGTTCTGCTGCTCTTTATAGAACTGAACCGTGGAAAAGATTGCGTCCTTGGCATCTTTTTGG TATCCGGGTAGGGAAGGATTCGGATTGGTCCGGCAAGAAACAGCCTTTTCCTTGTGTTCAGTTCATAGGAGGTGATGGTGGGGATGTTGGGTTTTATATG TTTCGATCTGAAAGTGATGCTAAGAAGATGACTGGACCGAGAGAGACAATTCGTGTTCCAAATGTTGAGCTTTTGAGGGTCTCGTATGAACCTGAGAGGT TGATGTTTCCTTCAAATAAGAGAATGATCAAGTCTTTGTCATTGGAAGCATCGGGTACTGATAGGTTTCCTGTGATTGATGTTGCACGTTGTATGTCTTC TGGTGAGCTTCGGTTTAGGAATCCAACTCTTGAAGAGCTTAGGTTTGTGCATGCCTTCATGAGAGCTATTTCTCTTGTGCATCCACTACTCCAGGAAGAT AAAGATGGTGCTCCAAAATGGTCAAGGATGATGTATTTTGAAACATTTATTGAGACTGTGGATGTTCAATGGCCTCCAGAAATGGCCAAGGGTCATGACC TTGTTGCAGTTACTGTCTCACATCCTCCTGGTCAGGCATATGAGGAAAAGGCTAGCTCAACAGCTAGCTCGACACCCACCAAGTATGCTGAACCACCAAG GGAGGAGGTCTTTGTTGATGTAAGAGTAAATTCAAATGGTGTCTTGAGGCAGTGTACATTGTGCGAGAAAGAAGTTCATGGAGACCAGTCTCAATGTTGT GCGCAGTGTCGCGCTGTGGTCTACTGCAGTTCTCTGTGCCAGAAGCAGCACTGGAAGGAAACACACAAGAGCATGTGTGGTCTTTACAAGGCTATGATGG AAAGAGAAGAAGAGCTGGCAATGAAAATCTTTTTGTTCCCATGTTCAGCTGACCAGCCTTGTAAATGGCTTGAGTCACTGGGCATCCATCAAAAAGGCAT GTGGAGAAGGAAGTGTGGTTGCTATGCTCACTGCCCTCTTGGTCTCCTTCCTGTCAAAGGTGGGCTTTGGGACTCATGGGGTGGGCTGGATGATGAGGAG TACCCTCGTGATTCCCCTTTTCACAACCACGTAAGAGATGGAATATCAAGCCCAATCCTTCTTTCTGGTTGGTCAGAGTACTATAATCTTCGGTCGCTGC CATTATCAAGCCCTGTTGCTGACATTCTCTCTCACCCATTTACAGTTTATTACATATTAACTGCTCTTAATATTAGTTCGAAGAACCTGTTACTCAAAGG GAAAGAGGTGATTCTTCACTACCTTGGTCCTGAAGGGGAGTTAGATTGGATGCCTGCATTTGCAGAGATTGGCCATTTGCTGAATGGATCAGGAAATATA CATATTGTAATGGTGGGACCGGAAGTTCCAACTAACTTGTCAGGGACAACTTCAGGAATAAGTAGTAGAGTGAGGGTGAATCTTGTGAGAGGTAATTATC AGGATGAAGCCACCTATCTTCCTTCTCCACATATCATTGTTGCATTGAACTGTGGATTGGAGAGCTATTCTGCTTGGGGAGGAGCACTTGAATTGATAAA ATCTAGAGGTGTTCCAGCCTTCTTCACAGAGCAGTCTGAAATTTTATGTGCGAATGCAAAGCAGGTTCTTCGCGGAGCTGGATTACACATTACACATCCA GTGACACCAAATCCTTTCCGCTCTCCAATCAAGACTCACTGTCTTTCAAACAATCTTCCTTCATATAGCAATGGTTTTGTGCTTGGGGTGAATACATGA
AA sequence Show only first row Show all	>Potri.011G001800.1 pacid=42781873 polypeptide=Potri.011G001800.1.p locus=Potri.011G001800 ID=Potri.011G001800.1.v4.1 annot-version=v4.1 MDLHLKNLFGRFQEQFGSGPGLGPGSSTCLMKVEGVSPNFIKSIYKGSAALYRTEPWKRLRPWHLFGIRVGKDSDWSGKKQPFPCVQFIGGDGGDVGFYM FRSESDAKKMTGPRETIRVPNVELLRVSYEPERLMFPSNKRMIKSLSLEASGTDRFPVIDVARCMSSGELRFRNPTLEELRFVHAFMRAISLVHPLLQED KDGAPKWSRMMYFETFIETVDVQWPPEMAKGHDLVAVTVSHPPGQAYEEKASSTASSTPTKYAEPPREEVFVDVRVNSNGVLRQCTLCEKEVHGDQSQCC AQCRAVVYCSSLCQKQHWKETHKSMCGLYKAMMEREEELAMKIFLFPCSADQPCKWLESLGIHQKGMWRRKCGCYAHCPLGLLPVKGGLWDSWGGLDDEE YPRDSPFHNHVRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPFTVYYILTALNISSKNLLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNI HIVMVGPEVPTNLSGTTSGISSRVRVNLVRGNYQDEATYLPSPHIIVALNCGLESYSAWGGALELIKSRGVPAFFTEQSEILCANAKQVLRGAGLHITHP VTPNPFRSPIKTHCLSNNLPSYSNGFVLGVNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21890			unknown protein		Potri.011G001800 [exp]	0	1
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	1.73	0.7915
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.006G034200 [exp]	3.74	0.7426
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	8.00	0.7172
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	8.12	0.7709
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	10.24	0.7664
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	12.56	0.8113
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	14.96	0.8016
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	16.37	0.7745
AT3G12010			unknown protein		Potri.016G060500 [exp]	16.43	0.7387
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	18.43	0.7374

Compare expression of checked genes

Potri.011G001800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.