Plant FIBer expression Database

Potri.011G001901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21895 74 / 6e-15 DNA binding (.1)
AT5G52890 65 / 2e-11 AT hook motif-containing protein (.1.2)
AT5G54930 62 / 1e-10 AT hook motif-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G017000
[exp]
597 / 0 AT4G21895 96 / 2e-22 DNA binding (.1)
Potri.001G422966
[exp]
70 / 6e-13 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2)
Potri.011G138700
[exp]
69 / 2e-12 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001140
[exp]
176 / 4e-50 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2)
Lus10002064
[exp]
165 / 1e-45 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2)
Lus10040754
[exp]
72 / 5e-14 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2)
Lus10016478
[exp]
72 / 1e-13 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.011G001901.2 pacid=42780992 polypeptide=Potri.011G001901.2.p locus=Potri.011G001901 ID=Potri.011G001901.2.v4.1 annot-version=v4.1
ATGGATCCTCTGAGTCAGGGGACTAGCTCCACTCCAGTGGATCCTCCTATGAAACGCAAACGTGGCCGTCCGCGCAAGGATGAGAGCTCAGTACCAGGCG
AGAAAACACCAGTATTGCCTGAATCTGACAATATGAAGGAAAACAAAGAGACTACAGGAACAACTGGTGCTAGCATGGTGGGTCAGGTGATTACCGGTGT
TATTGATGGTTTATTTGATGCTGGATATCTTGTTAAAGTTAAGGTAGGGGACTCTGACACTCCTTTGAGGGGTCTTGTATTTCTACCCAGCCGATTCATT
CCCATCACTGCTGCAAATGATCTGCCTAGTTTTGTTACTTCACCAGAGCAAAGTGATAAGCAACTGGTTGAGTTAAAAAAGCTTGCACCCACTGCTCAAG
ACAAAGGGCTACAATCTGGGTTTCAACCAACTGTCCCAACTGCAAAGGAGAGCCAGTCTGCTCCTCAGATGCTGCCTCTGACTGAATACTTGCAGAGTAG
CACAGGACCTTCCTTTGGAGGGAAAGTTGTGCGGCATCAAGTTTTGGGTTCAGGATGTGACAATCAATCTGCCTCTGCTATGGCACAGATGGGGCATAAT
AAGGTTGCCGGACAGCATGATTTGATGCTGGAATATGAAGCCTCCCTAAGAAAAGGTCCTAATTTAAGCGTAAAGGCAAATGAACAATCAAAATCTGTGT
CACTACCTGCACCTCCTGCTGATATTTTGCCAGGCAGTGAAACTGCTAAGATGGAGCTTGAAATTCAACAGCAACCTTCCAGTGATGACCTTAAGGTGAA
TCAACCAGTTCATTATGGAGTAAAAAGCCCTAGTTCTTTCATGGAAAAAAAGGCTTCTCCAAAAAATGTTGCACCTCCGGAGCCTGCTATGAAGATTATC
AGTGGGGATGATAAATCCCATCTTAATGGTAGTTCTATAGGTCCTGCTGCTAACTCTACTGAGGCAAACTCACTGTCAGAACCAATTGAAAGCTTTCCAT
CACTATTGTTTGAGAGAGAAGCTATTCCCTCAACACCAAAGCTTGCAGCTGAAGGATCTCCTCTTCAGAGAGTCACCAAACCCCAGTCAGATGGTTCTTC
TGGTGGTACAGATATTATGAAGGCAGGGGCAGACACTTCAGCATCAATTATCCTACCTGCAACTCTATTTGGGAGAGAAGCTATTCTTCCAGAATCCAAG
ACTGCTTCCGATGAACTTGTTCTTCATAGAATGACCACACCCCAGATCTGCAGTTCTCCTAGTGTTGCCAATAATGTGGACAGTAATATCAAGGATGTCA
TTCCACCTGCCGAATCTTAG
AA sequence
>Potri.011G001901.2 pacid=42780992 polypeptide=Potri.011G001901.2.p locus=Potri.011G001901 ID=Potri.011G001901.2.v4.1 annot-version=v4.1
MDPLSQGTSSTPVDPPMKRKRGRPRKDESSVPGEKTPVLPESDNMKENKETTGTTGASMVGQVITGVIDGLFDAGYLVKVKVGDSDTPLRGLVFLPSRFI
PITAANDLPSFVTSPEQSDKQLVELKKLAPTAQDKGLQSGFQPTVPTAKESQSAPQMLPLTEYLQSSTGPSFGGKVVRHQVLGSGCDNQSASAMAQMGHN
KVAGQHDLMLEYEASLRKGPNLSVKANEQSKSVSLPAPPADILPGSETAKMELEIQQQPSSDDLKVNQPVHYGVKSPSSFMEKKASPKNVAPPEPAMKII
SGDDKSHLNGSSIGPAANSTEANSLSEPIESFPSLLFEREAIPSTPKLAAEGSPLQRVTKPQSDGSSGGTDIMKAGADTSASIILPATLFGREAILPESK
TASDELVLHRMTTPQICSSPSVANNVDSNIKDVIPPAES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21895 DNA binding (.1) Potri.011G001901
[exp]
0 1
AT3G22060 Receptor-like protein kinase-r... Potri.007G120300
[exp]
1.00 0.9697
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.011G030650
[exp]
2.44 0.9284
AT3G22060 Receptor-like protein kinase-r... Potri.007G120601
[exp]
3.46 0.9473
AT4G00910 Aluminium activated malate tra... Potri.002G174600
[exp]
4.47 0.9543
AT2G34930 disease resistance family prot... Potri.001G262800
[exp]
4.89 0.9436
AT5G05340 Peroxidase superfamily protein... Potri.013G154400
[exp]
6.00 0.9208 Pt-PRX1.9
AT3G22060 Receptor-like protein kinase-r... Potri.007G120600
[exp]
6.32 0.9231
AT3G09390 ATMT-K, ATMT-1,... ARABIDOPSIS THALIANA METALLOTH... Potri.013G131200
[exp]
9.53 0.9276
AT4G26200 ACS7, ATACS7 1-amino-cyclopropane-1-carboxy... Potri.018G067000
[exp]
13.41 0.9152 Pt-ACS3.2
AT4G20820 FAD-binding Berberine family p... Potri.011G162968
[exp]
13.85 0.9121

Potri.011G001901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.