Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 646 / 0 MATE efflux family protein (.1) AT1G61890 621 / 0 MATE efflux family protein (.1) AT1G11670 617 / 0 MATE efflux family protein (.1) AT4G21910 570 / 0 MATE efflux family protein (.1.2.3.4) AT4G21903 538 / 0 MATE efflux family protein (.1.2) AT5G38030 430 / 9e-147 MATE efflux family protein (.1) AT3G26590 425 / 8e-145 MATE efflux family protein (.1) AT1G47530 421 / 1e-143 MATE efflux family protein (.1) AT3G59030 412 / 6e-140 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT1G12950 411 / 4e-139 RSH2 root hair specific 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002800 [exp] 886 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 824 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 806 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 681 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 663 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 653 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 648 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 632 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 427 / 2e-145 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002067 [exp] 728 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 716 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 658 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 597 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 585 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 566 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10042130 [exp] 422 / 8e-144 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 416 / 2e-141 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 415 / 3e-141 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 416 / 5e-141 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G002700.1 pacid=42781925 polypeptide=Potri.011G002700.1.p locus=Potri.011G002700 ID=Potri.011G002700.1.v4.1 annot-version=v4.1 ATGGAGACTGATCCTCCGAGATTAGACTTTAAACTCTCTTACCATGATGATGAGACAGTGGGCGATGAGCTTGAACAAATACTAACAGATACTGAAGCAC CATACTCTAAGAGAATCCGTTCAGCTTCTTGGGTTGAACTGAAATTGCTTTTCCACCTTGCAGCTCCAGCTGTGATAGTTTACTTGCTCAATAATGTTGT TTCCATGTCTACTCAGATCTTTTGTGGTCACCTTGGAAACCTTGAGCTTGCTGCTGTCTCTCTTGGTAACAATGGTATCCAAATGTTTGCCTATGGCCTT ATGCTTGGTATGGGAAGTGCAGTAGAAACTCTGTGTGGCCAAGCATATGGATCAAATAGACATGAAATGCTAGGCATATACCTCCAAAGATCAACTGTTC TCCTCATGGCAACAGGGATATTCCCCTTAATGATGATCTATATATTTTCCAAACCTATCTTGATCTTACTCGGGGAGCCAGCCAATATAGCATCAGCAGC TGCAGTTTTTGTCTTTGGACTCATCCCTCAAATTTTCGCTTACGCTGCCAACTTTCCTATTCAAAAATTCTTGCAAGCACAAAGCATAATCGCACCTAGC GCGTACATATCACTAGGTGCACTTGTGGTGCATGTTTTGCTCACCTGGCTTGCAGTCTTCAAATGGAACTGGGGCTTACTAGGAGCAGGTCTTGTGTTGA GTTTATCTTGGTGGATCATTGTGGTGGCTCAGTTTGTGTACATTGTAATGAGCAAGAAGTGTAGAAACACATGGAAAGGTTTTAGCGTGGAGGCCTTTAG TGGGCTTTGGAGCTTCTTCAAACTGTCTGCTGCATCAGCAGTAATGTTGTGTTTGGAGACTTGGTACTATCAGATTTTAGTATTGATTGCTGGGTTGCTT AAAAATGCTGAGGTTGCATTAGACTCACTCTCAGTTTGCATGACAATAAATGTATGGGTTTTCATGATTTCAGTGGGTTTCAATGCTGCTGCAAGTGTGA GAGTGAGCAATGAGCTAGGAGCAGGACATCCAAAATCAGCATCATTTTCTGTCCTTGTGGTGACTTCATGCTCATTTATAATTTCAGTAATCGCAGCCAT TATTGTGATGATGTTCCGAGACTCCATTAGCTATATCTTCACTGAAGGTGAAGTTGTTGCTAAAGCTGCCTCTGACCTCTCTCCATTCCTTGCTGTTACA ATCATACTAAATGGTGTTCAGCCTGTTCTATCTGGGGTGGCTGTTGGATGTGGATGGCAAGCATTTGTTGCATATGTTAACGTAGGATGCTACTACCTTA TTGGTGTTCCACTAGGGGTGCTTCTTGGTTTTACATTTGACCTTGGTGCCAAGGGTATATGGTCAGGCATGTTGGGGGGCACAGTTTTGCAAACTTTGAT TTTGCTGTGGGTCACTTGGAGAACAGACTGGAATACAGAGGTGGAGGTTGCGAAAAACCGGCTGAGTTCATGGGATGACAAAAGGCAGCCTCTTCTACAG AATTGA
AA sequence Show only first row Show all	>Potri.011G002700.1 pacid=42781925 polypeptide=Potri.011G002700.1.p locus=Potri.011G002700 ID=Potri.011G002700.1.v4.1 annot-version=v4.1 METDPPRLDFKLSYHDDETVGDELEQILTDTEAPYSKRIRSASWVELKLLFHLAAPAVIVYLLNNVVSMSTQIFCGHLGNLELAAVSLGNNGIQMFAYGL MLGMGSAVETLCGQAYGSNRHEMLGIYLQRSTVLLMATGIFPLMMIYIFSKPILILLGEPANIASAAAVFVFGLIPQIFAYAANFPIQKFLQAQSIIAPS AYISLGALVVHVLLTWLAVFKWNWGLLGAGLVLSLSWWIIVVAQFVYIVMSKKCRNTWKGFSVEAFSGLWSFFKLSAASAVMLCLETWYYQILVLIAGLL KNAEVALDSLSVCMTINVWVFMISVGFNAAASVRVSNELGAGHPKSASFSVLVVTSCSFIISVIAAIIVMMFRDSISYIFTEGEVVAKAASDLSPFLAVT IILNGVQPVLSGVAVGCGWQAFVAYVNVGCYYLIGVPLGVLLGFTFDLGAKGIWSGMLGGTVLQTLILLWVTWRTDWNTEVEVAKNRLSSWDDKRQPLLQ N

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21690			MATE efflux family protein (.1...		Potri.011G002700 [exp]	0	1
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	1.00	0.8969
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	2.23	0.8690
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	4.58	0.8474
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	6.63	0.8549
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	13.85	0.8831
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	16.88	0.8492
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	19.20	0.8812
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	26.83	0.8204
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	28.00	0.8511	LPD2
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.002G125300 [exp]	28.42	0.8639

Compare expression of checked genes

Potri.011G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.