Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 654 / 0 MATE efflux family protein (.1) AT1G61890 632 / 0 MATE efflux family protein (.1) AT1G11670 622 / 0 MATE efflux family protein (.1) AT4G21910 563 / 0 MATE efflux family protein (.1.2.3.4) AT4G21903 531 / 0 MATE efflux family protein (.1.2) AT5G38030 431 / 3e-147 MATE efflux family protein (.1) AT3G26590 428 / 4e-146 MATE efflux family protein (.1) AT1G47530 427 / 8e-146 MATE efflux family protein (.1) AT3G59030 417 / 1e-141 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT1G12950 415 / 1e-140 RSH2 root hair specific 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002800 [exp] 828 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 824 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 796 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 687 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 676 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 649 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 643 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 638 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 432 / 1e-147 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002067 [exp] 729 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 716 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 662 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 596 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 588 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 572 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10042130 [exp] 427 / 6e-146 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 427 / 8e-146 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 426 / 1e-145 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 420 / 8e-143 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G002900.1 pacid=42782000 polypeptide=Potri.011G002900.1.p locus=Potri.011G002900 ID=Potri.011G002900.1.v4.1 annot-version=v4.1 ATGAATTCTGAGCCTTTGAGATTGAGCTTCAAGCTCTCATTCCATGACGAGACAAGGAGCAGCGAGCTTGAACAAATACTAGCAGATACTGAAGCACCAT ATTTTAAGAGAATCCGTTCAGCTTCCTGGGTTGAACTGAAATTGCTTTTCCACCTTGCAGCTCCAGCTGTGATAGTTTACTTGCTCAATAATGTTGTTTC CATGTCTACTCAGATCTTTTGTGGTCACCTTGGAAACCTTGAGCTTGCTGCTGTCTCTCTTGGTAACACTGGTATCCAAATGTTTGCCTATGGTCTTATG CTTGGTATGGGAAGTGCAGTGGAGACACTATGTGGCCAAGCATTTGGGGCACATAGATATGAAATGCTAGGTGTATACCTCCAAAGGTCAACAATTCTCC TCATGGCAACGGCTATCCCTCTAATGGTGATCTACATATTTTGCGAACCTCTCTTGATGTTATTAGGTGAACCAGTCAGCATAGCATCAGCAGCTGCAGT TTTTGTCTATGGACTTATCCCTCAAATTTTTGCTTATGCTGCCAATTTTCCTATTCAAAAATTTTTGCAAGCCCAAAGCATAATTGCCCCTAGTGCATAT ATATCATTGGGTGCCCTTGTGGTTCATGTTTTGCTCTCCTGGCTCGCAATCTTCAAATGGAACTGGGGCTTGCTAGGTGCTGGCCTTGTCTTGAGTTTAT CATGGTGGATCATTGTGGGGGGTCAGTTTGTGTACATTTTAACGAGTAAGAGCTGTAGAAAGACATGGCAAGGTTTCAGTATGGAGGCCTTTAGTGGGCT TTGGAGCTTCTTCAAACTGTCTGCTGCATCAGCAGTAATGTTGTGTTTGGAGACTTGGTACTATCAGATTTTAGTATTGATTGCTGGGTTGCTTAAAAAT GCTGAGGTTGCATTGGATGCTCTGTCAGTTTGCATGACATTATCAGGATGGGTGTTTATGATTTCAGTTGGATTTAATGCTGCTGCAAGTGTGAGAGTGA GCAATGAGCTAGGAGCAGGACATCCAAAATCAGCATCATTTTCAGTCCTTGTAGTGACTTCATGCTCATTTATAATTTCAGTAATCGCAGCCATTATTGT GCTGATATTTCGAGACTCCATTAGCTATATCTTCACTGAAGGTGAAGTTGTTGCTAAAGCTGCCTCTGATCTCTCCCCATTCCTTGCTGCTACTCTCATA CTAAATGGCATTCAGCCTGTCCTGTCCGGTGTGGCTGTCGGATGTGGATGGCAAGCATTTGTTGCATATGTGAATGTAGGATGCTACTACCTTATTGGAG TTCCAGTAGGAGTGGTTCTTGGTTTTACATTTGACCTTGGTGCCAAGGGAATATGGTCAGGCATGTTAGGAGGGACCGTTTTGCAAACTATAATCTTGGT GTGGGTTACTTTGAGAACAGATTGGGATAAAGAGGTGGAGAGTGCCAAAAACCGGTTGAGTTCATGGGATGAAAAAGGGCAACCTCTTCTTGTGGAGTAA
AA sequence Show only first row Show all	>Potri.011G002900.1 pacid=42782000 polypeptide=Potri.011G002900.1.p locus=Potri.011G002900 ID=Potri.011G002900.1.v4.1 annot-version=v4.1 MNSEPLRLSFKLSFHDETRSSELEQILADTEAPYFKRIRSASWVELKLLFHLAAPAVIVYLLNNVVSMSTQIFCGHLGNLELAAVSLGNTGIQMFAYGLM LGMGSAVETLCGQAFGAHRYEMLGVYLQRSTILLMATAIPLMVIYIFCEPLLMLLGEPVSIASAAAVFVYGLIPQIFAYAANFPIQKFLQAQSIIAPSAY ISLGALVVHVLLSWLAIFKWNWGLLGAGLVLSLSWWIIVGGQFVYILTSKSCRKTWQGFSMEAFSGLWSFFKLSAASAVMLCLETWYYQILVLIAGLLKN AEVALDALSVCMTLSGWVFMISVGFNAAASVRVSNELGAGHPKSASFSVLVVTSCSFIISVIAAIIVLIFRDSISYIFTEGEVVAKAASDLSPFLAATLI LNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGVPVGVVLGFTFDLGAKGIWSGMLGGTVLQTIILVWVTLRTDWDKEVESAKNRLSSWDEKGQPLLVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	0	1
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	14.49	0.7266	ATCS.2
AT3G48140			B12D protein (.1)		Potri.008G179401 [exp]	19.79	0.7041
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.010G063500 [exp]	22.47	0.7298	Pt-AMT1.4,1
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Potri.011G130533 [exp]	26.11	0.6877
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	27.05	0.7390
					Potri.015G131300 [exp]	29.93	0.6798
AT5G65780		ATBCAT-5	branched-chain amino acid amin...		Potri.007G008000 [exp]	33.88	0.6837
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Potri.010G011000 [exp]	36.12	0.6499
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	46.47	0.6168
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.002G224000 [exp]	47.49	0.7150

Compare expression of checked genes

Potri.011G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.