Plant FIBer expression Database

Potri.011G003000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61900 521 / 0 unknown protein
AT2G30700 292 / 4e-94 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G016000
[exp]
775 / 0 AT1G61900 524 / 0.0 unknown protein
Potri.017G018000
[exp]
289 / 7e-93 AT2G30700 614 / 0.0 unknown protein
Potri.007G133800
[exp]
286 / 1e-91 AT2G30700 608 / 0.0 unknown protein
Potri.007G133733
[exp]
157 / 2e-45 AT2G30700 298 / 9e-100 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020048
[exp]
520 / 0 AT1G61900 479 / 5e-169 unknown protein
Lus10006773
[exp]
506 / 3e-179 AT1G61900 445 / 1e-155 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G003000.1 pacid=42781835 polypeptide=Potri.011G003000.1.p locus=Potri.011G003000 ID=Potri.011G003000.1.v4.1 annot-version=v4.1
ATGAATGAAGGGGTGTCTCTCAAGCTGAAGCTGAGTCTGAGTATGGTTTTTGTGGAGGTGCTTTTGTTGATTTCGAGTCTGAATGAATGTCACTGCAGCC
CATTCAATGATTTTGGAGGTCCATTGTCGACTGACAGAAGAGTAGATGGTTTTCTTCCTGAGATCTCTCCAGATTCAGCTCCTCAGCCCCTTCTTCCTCT
TCTTGCACCTACTCCTTTAGCACCTTTCACAAACAGTACTGTCCCAAAGTTATCAGGACAATGCACATTAAATTTCACTGCTGCCCAAAGTTTGATGAGC
ACAACATCAATTGATTGTTGGTCTGTTTTTGCGCCATTGCTGGCTAATGTTATATGCTGTCCACAGTTAGAAGCCACTCTTGCAATACTTGTTGGCCAAT
CCAGTAAAGATACCAATGCTCTTGCTTTAAATGGGACTGTTTCAAAGTATTGCCTTTCAGATATTGAGCAAATTTTGGTGGGTCAGGGTGCAGCAGCTAA
TGTGAATAAGATATGCTCAATTCATCCTTCAAATCTCACTGAAGGGGCTTGCCCTGTCAAGGATGTCAATGAATTTGAGGGCACTGTGGATTCTTCCAAG
CTACTTGCTGCCTGTGAAAGTATTGATCCTGTTAAAGAATGTTGTAATCAAGTTTGTCAAAATGCCATATTAGAAGCTGCGACAAAAATTGCATTAAAAG
GTTCTGAAGTGTTGAGCATAGCTGGGTCCCGTGGTTTAACTGAGCAGTCAACAAAGGTTGTTGATTGTAAACAGATTGTACTCCGATGGCTGGCTGGTAA
ACTCGATCCTTCTCATGCAAAGGAGGTTCTCAGAGGACTATCTAATTGCAAAGTTAATAACGTTTGCCCTCTGGTTTTCCCTGATATGAGACATGTTGCA
AAGGGCTGTGGGAATGGGATTAGTAACAAGACAGAATGTTGTAGTGCCATGGAGAGCTACGTGTCTCACTTGCAGAAGCAGAGCCTCGTAACCAACTTGC
AAGCTCTGAATTGTGCTACAACTCTAGGAATGAAGTTACAGAGGTCAAATATTACAAAAGATGTTTATAGCCTTTGTCATATAACCCTTAAGGATTTCTC
CCTTCAAGTTGCAATTCAAGAGTCTGGATGCCTTCTACCAAGCTTGCCTTCTGATGCAACATTTGATCAGTACTCAGGGATCAGCTTCATTTGTGATTTG
AATGACAATATTCCTGCTCCATGGCCATCTACATCTCAGTTATCAGCATCATGCAATAAAACCATAAAAATTCCAGCACTTCCTGCTGCTGCAAATGCTC
AAAGTGGTCTGTACAATGAAGATGTGATATTTTATGTGCTGTTTGCTGCCTCATCTGTTACCATGATGCTCTTGTAG
AA sequence
>Potri.011G003000.1 pacid=42781835 polypeptide=Potri.011G003000.1.p locus=Potri.011G003000 ID=Potri.011G003000.1.v4.1 annot-version=v4.1
MNEGVSLKLKLSLSMVFVEVLLLISSLNECHCSPFNDFGGPLSTDRRVDGFLPEISPDSAPQPLLPLLAPTPLAPFTNSTVPKLSGQCTLNFTAAQSLMS
TTSIDCWSVFAPLLANVICCPQLEATLAILVGQSSKDTNALALNGTVSKYCLSDIEQILVGQGAAANVNKICSIHPSNLTEGACPVKDVNEFEGTVDSSK
LLAACESIDPVKECCNQVCQNAILEAATKIALKGSEVLSIAGSRGLTEQSTKVVDCKQIVLRWLAGKLDPSHAKEVLRGLSNCKVNNVCPLVFPDMRHVA
KGCGNGISNKTECCSAMESYVSHLQKQSLVTNLQALNCATTLGMKLQRSNITKDVYSLCHITLKDFSLQVAIQESGCLLPSLPSDATFDQYSGISFICDL
NDNIPAPWPSTSQLSASCNKTIKIPALPAAANAQSGLYNEDVIFYVLFAASSVTMMLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61900 unknown protein Potri.011G003000
[exp]
0 1
AT2G38670 PECT1 phosphorylethanolamine cytidyl... Potri.018G132700
[exp]
11.87 0.7143
AT5G65470 O-fucosyltransferase family pr... Potri.007G011000
[exp]
13.22 0.6999
AT5G19730 Pectin lyase-like superfamily ... Potri.018G068400
[exp]
16.97 0.6732
AT3G16920 ATCTL2 chitinase-like protein 2 (.1) Potri.014G146600
[exp]
17.43 0.6832
AT2G13610 ABCG5 ATP-binding cassette G5, ABC-2... Potri.005G064300
[exp]
17.74 0.6776 PtrWBC5-1
AT1G75620 glyoxal oxidase-related protei... Potri.002G027000
[exp]
19.79 0.6516
AT3G24240 Leucine-rich repeat receptor-l... Potri.005G117700
[exp]
23.28 0.7161
AT5G67360 ARA12 Subtilase family protein (.1) Potri.002G120400
[exp]
24.91 0.6594
AT4G19400 Profilin family protein (.1) Potri.003G106700
[exp]
29.56 0.6723
AT1G79720 Eukaryotic aspartyl protease f... Potri.003G185175
[exp]
29.56 0.6433

Potri.011G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.